Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PST_RS05390 Genome accession   NC_009434
Coordinates   1166282..1167499 (+) Length   405 a.a.
NCBI ID   WP_011912244.1    Uniprot ID   A4VIF2
Organism   Stutzerimonas stutzeri A1501     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1161282..1172499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PST_RS21170 (PST_1052) - 1162246..1162800 (-) 555 WP_011912240.1 REP-associated tyrosine transposase -
  PST_RS21175 (PST_1054) - 1163755..1164267 (-) 513 WP_011912242.1 pilin -
  PST_RS05385 (PST_1055) pilB 1164577..1166280 (+) 1704 WP_011912243.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PST_RS05390 (PST_1056) pilC 1166282..1167499 (+) 1218 WP_011912244.1 type II secretion system F family protein Machinery gene
  PST_RS05395 (PST_1057) pilD 1167502..1168371 (+) 870 WP_011912245.1 prepilin peptidase Machinery gene
  PST_RS21180 (PST_1058) coaE 1168503..1169111 (+) 609 WP_080505042.1 dephospho-CoA kinase -
  PST_RS21185 yacG 1169108..1169305 (+) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  PST_RS05405 (PST_1059) - 1169318..1169998 (-) 681 WP_011912247.1 energy-coupling factor ABC transporter permease -
  PST_RS05410 (PST_1060) - 1170055..1171095 (-) 1041 WP_011912248.1 NADP(H)-dependent aldo-keto reductase -
  PST_RS05415 (PST_1061) rplM 1171510..1171938 (+) 429 WP_003287302.1 50S ribosomal protein L13 -
  PST_RS05420 (PST_1062) rpsI 1171954..1172346 (+) 393 WP_011912249.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44142.91 Da        Isoelectric Point: 9.8656

>NTDB_id=27963 PST_RS05390 WP_011912244.1 1166282..1167499(+) (pilC) [Stutzerimonas stutzeri A1501]
MAQKAIKTSVFTWEGTNKQGAKIKGELSGISPAMVKAQLRKQGVNPQKVRKKSASLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFIVLVGLIAGAFAFK
EAHKRSEKFRNWFDRLLLKVPVVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRSATMKVKSDVSSGM
QLNFSMRTTGTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=27963 PST_RS05390 WP_011912244.1 1166282..1167499(+) (pilC) [Stutzerimonas stutzeri A1501]
ATGGCGCAGAAAGCGATTAAAACCAGTGTGTTCACCTGGGAAGGCACCAACAAGCAGGGTGCGAAGATCAAGGGCGAGCT
AAGCGGGATCAGCCCTGCGATGGTCAAGGCGCAGCTGCGCAAGCAGGGCGTAAACCCTCAAAAGGTGCGTAAGAAGTCGG
CGTCGCTGTTCAGTGCTGGCAAGAAGATCAAGCCGATGGATATCGCCTTGTTCACTCGTCAGATGGCGACCATGATGAAG
GCCGGTGTGCCGCTGCTGCAGTCATTCGACATTATTGGCGAGGGGTTCGATAACCCGAACATGCGTAAGCTGGTCGATGA
TCTCAAGCAGGAGGTCGCGGCGGGTAACAGTTTCGCCACTGCGTTGCGCAAGAAGCCGCAGTACTTTGACGATCTCTACT
GCAACCTAGTGGACTCCGGGGAGCAGTCTGGTTCCTTGGAGACGTTGCTTGATCGCGTCGCAACCTACAAGGAAAAAACC
GAGGCTCTCAAGGCAAAGATCAAGAAGGCGATGAATTATCCCATTGCGGTAGTGTTGGTGGCGATCATCGTGTCGGCCAT
TCTGTTGATCAAGGTGGTGCCACAGTTCCAAGAGGTGTTTGCCAACTTCGGGGCCGAGCTTCCGGCTTTTACCTTGATGG
TAATTGGGTTGTCGGAAGCGCTCCAGGAGTGGTGGTTCATTGTTCTGGTGGGGCTGATTGCGGGCGCTTTTGCTTTCAAG
GAGGCGCACAAGCGCTCCGAGAAATTCCGCAACTGGTTCGATCGTTTGCTGCTGAAGGTACCGGTTGTTGGTGACATTCT
TTACAAGTCATCGGTCGCCCGCTTCGCCCGCACTCTATCGACGACTTTCGCTGCGGGCGTGCCACTTGTGGATGCGCTGG
ATTCGGTGGCTGGGGCTACAGGCAATGTGGTCTTTCGAAGTGCGACGATGAAAGTCAAAAGTGACGTATCGTCTGGCATG
CAGCTGAACTTCTCCATGCGCACCACCGGTACCTTTCCAACCATGGCGGTGCAAATGACGGCGATTGGCGAGGAGTCAGG
CTCGCTTGACGAGATGTTGGCCAAGGTGGCGACCTTCTACGAGGATGAGGTCGATAACATGGTTGATAGCCTGACTAGCC
TGATGGAGCCAATGATCATGGCCGTGCTCGGGGTTCTGGTGGGCGGCTTGATCATCGCTATGTACCTTCCGATCTTCCAG
CTAGGTGCTGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4VIF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

91.605

100

0.916
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Acinetobacter baumannii D1279779

59.506

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.03

97.778

0.519
  pilG Neisseria gonorrhoeae MS11

45.161

99.506

0.449
  pilG Neisseria meningitidis 44/76-A

45.161

99.506

0.449
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4

Multiple sequence alignment