Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J88_RS03855 Genome accession   NZ_CP027733
Coordinates   885294..886502 (-) Length   402 a.a.
NCBI ID   WP_124365788.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-39-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880294..891502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J88_RS03820 (C4J88_0763) - 881592..881765 (-) 174 WP_124361240.1 DUF3094 family protein -
  C4J88_RS03825 (C4J88_0764) - 881819..882448 (-) 630 WP_124365784.1 DUF1780 domain-containing protein -
  C4J88_RS03830 (C4J88_0765) - 882649..883338 (+) 690 WP_124406255.1 energy-coupling factor ABC transporter permease -
  C4J88_RS03835 (C4J88_0766) - 883402..883617 (+) 216 WP_124406256.1 hypothetical protein -
  C4J88_RS03840 (C4J88_0767) yacG 883614..883814 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  C4J88_RS03845 (C4J88_0768) coaE 883811..884434 (-) 624 WP_124365786.1 dephospho-CoA kinase -
  C4J88_RS03850 (C4J88_0769) pilD 884431..885297 (-) 867 WP_124365787.1 A24 family peptidase Machinery gene
  C4J88_RS03855 (C4J88_0770) pilC 885294..886502 (-) 1209 WP_124365788.1 type II secretion system F family protein Machinery gene
  C4J88_RS03860 (C4J88_0771) - 886702..887115 (+) 414 WP_124368933.1 pilin -
  C4J88_RS03870 (C4J88_0773) - 887429..887734 (+) 306 WP_124361246.1 DUF6388 family protein -
  C4J88_RS03875 (C4J88_0774) nadC 887854..888702 (-) 849 WP_124406257.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J88_RS03880 (C4J88_0775) - 888949..891105 (+) 2157 WP_124406258.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43312.71 Da        Isoelectric Point: 9.9017

>NTDB_id=279619 C4J88_RS03855 WP_124365788.1 885294..886502(-) (pilC) [Pseudomonas sp. R4-39-08]
MNDTSTIYTWQGINRKGRRVCGQTTGHDLALIKAQLRQQGICPERVRRKSSGLPSLAPPIQSADIALFTRQLATLLKAGI
PLLQAFDIIREGVENRALRELVEGLKQHVAAGNSLASTLRQYPRYFDELYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVASLVSAVLLMQVVPQFQNLFAGVDSPLPGFTLGVIALSDFLRQAWWMLALGLGAAIGALRHAY
RLSPGFRHGLEAGLLKVPLAGKLLNKAAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLDKVASHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=279619 C4J88_RS03855 WP_124365788.1 885294..886502(-) (pilC) [Pseudomonas sp. R4-39-08]
ATGAACGACACCTCAACGATCTACACCTGGCAAGGCATCAACCGCAAAGGCCGCCGGGTGTGCGGGCAAACCACGGGGCA
TGACCTGGCGCTGATCAAGGCGCAACTGCGCCAGCAAGGCATCTGCCCCGAGCGTGTGCGCAGGAAATCGTCGGGCCTGC
CAAGCCTGGCTCCGCCGATTCAGTCCGCCGACATCGCCCTGTTCACCCGCCAGCTGGCGACGCTGTTGAAGGCTGGCATC
CCCTTGTTGCAAGCTTTCGACATCATCCGCGAGGGCGTCGAGAACCGAGCGCTGCGCGAGTTGGTCGAGGGTTTGAAACA
ACACGTCGCCGCCGGTAACAGCCTGGCCAGCACGCTGCGCCAATACCCCCGTTATTTCGATGAGCTGTACTGCCATTTGA
TTGCCGCCGGTGAACAGGCAGGTGCCCTGGAAACGCTGCTGGAGCGAGTGGCCATTCATCTGGAAAAAAGCCAACGGCTC
AAGACCAGAATCAAGAAAGCCATGACCTACCCTCTCGCCGTATTGGTGGTGGCCAGCCTGGTCAGCGCAGTGTTGCTGAT
GCAGGTGGTGCCGCAATTCCAGAACCTGTTCGCCGGGGTCGACAGCCCATTGCCCGGTTTTACCCTGGGGGTCATCGCCC
TCTCCGACTTTCTGCGACAGGCCTGGTGGATGCTGGCGCTGGGCCTGGGCGCGGCAATAGGCGCGCTGCGCCACGCCTAC
CGGCTTTCGCCGGGTTTTCGCCACGGGTTGGAGGCGGGTTTGTTGAAAGTCCCCCTGGCAGGCAAACTGTTGAACAAAGC
GGCCGTCGCCCGCTACGCCCGCACGCTTTCAACCACCTTTGCGGCAGGTGTTCCCCTGGTGCAGGCACTGGGCTCAGTGG
CCGGCGCCGTCGGTAACGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCAACGGGTATGCAGTTGAAT
CAATCCATGGCCGCCAGCGGGCTGTTTCCCGGCATGGCGATCCAGATGACAGCAATCGGCGAAGAGTCCGGCACGCTGGA
CCGCATGCTGGACAAGGTCGCGAGCCATTACGAGGCCGACGTAGAAACCCTCGTCGATAACCTTACCAGCCTGATGGAAC
CGCTGATCATGGTCGTGCTGGGGAGCATTGTCGGTGCATTGGTGATTGCGATGTACCTGCCGGTGTTTCAATTAGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.186

98.756

0.575
  pilC Acinetobacter baylyi ADP1

51.768

98.507

0.51
  pilC Acinetobacter baumannii D1279779

50.886

98.259

0.5
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilC Vibrio cholerae strain A1552

38.636

98.507

0.381
  pilG Neisseria gonorrhoeae MS11

40.157

94.776

0.381
  pilG Neisseria meningitidis 44/76-A

39.633

94.776

0.376
  pilC Thermus thermophilus HB27

37.594

99.254

0.373
  pilC Vibrio campbellii strain DS40M4

36.802

98.01

0.361

Multiple sequence alignment