Detailed information NTG0279618

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J88_RS03850
• Genome accession: NZ_CP027733
• Coordinates: 884431..885297 (-)
• Length: 288 a.a.
• NCBI ID: WP_124365787.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R4-39-08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 879431..890297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J88_RS03815 (C4J88_0762)	-	880233..881531 (-)	1299	WP_124361239.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J88_RS03820 (C4J88_0763)	-	881592..881765 (-)	174	WP_124361240.1	DUF3094 family protein	-
C4J88_RS03825 (C4J88_0764)	-	881819..882448 (-)	630	WP_124365784.1	DUF1780 domain-containing protein	-
C4J88_RS03830 (C4J88_0765)	-	882649..883338 (+)	690	WP_124406255.1	energy-coupling factor ABC transporter permease	-
C4J88_RS03835 (C4J88_0766)	-	883402..883617 (+)	216	WP_124406256.1	hypothetical protein	-
C4J88_RS03840 (C4J88_0767)	yacG	883614..883814 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J88_RS03845 (C4J88_0768)	coaE	883811..884434 (-)	624	WP_124365786.1	dephospho-CoA kinase	-
C4J88_RS03850 (C4J88_0769)	pilD	884431..885297 (-)	867	WP_124365787.1	A24 family peptidase	Machinery gene
C4J88_RS03855 (C4J88_0770)	pilC	885294..886502 (-)	1209	WP_124365788.1	type II secretion system F family protein	Machinery gene
C4J88_RS03860 (C4J88_0771)	-	886702..887115 (+)	414	WP_124368933.1	pilin	-
C4J88_RS03870 (C4J88_0773)	-	887429..887734 (+)	306	WP_124361246.1	DUF6388 family protein	-
C4J88_RS03875 (C4J88_0774)	nadC	887854..888702 (-)	849	WP_124406257.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31629.86 Da
• Isoelectric Point: 8.1746

>NTDB_id=279618 C4J88_RS03850 WP_124365787.1 884431..885297(-) (pilD) [Pseudomonas sp. R4-39-08]
MSALLGEQPWVFVGVALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPVVPAGPVYNLMHPGSCCPRCDQRIRPW
ENIPVLSYLMLKGRCSHCHATIGARYPLTELACALISANVAWHFGFSWQAGAVLLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLMVNSAGLLATLPDALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
VGVLLMRWRKTGASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279618 C4J88_RS03850 WP_124365787.1 884431..885297(-) (pilD) [Pseudomonas sp. R4-39-08]
TTGAGTGCGTTGCTGGGCGAGCAGCCCTGGGTGTTTGTGGGCGTGGCGCTGCTGCTGGGCCTGATCGTTGGCAGTTTCCT
CAATGTGCTGGTCTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGCGCCCAGGCCCATGAAATTCTCGGCCTGCCCG
TCGTACCGGCGGGGCCGGTCTATAACCTCATGCACCCCGGCTCGTGCTGCCCGCGCTGCGACCAGCGGATTCGCCCCTGG
GAAAACATCCCCGTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCAGCCATTGCCATGCAACCATCGGCGCGCGTTACCC
CCTCACCGAACTGGCATGCGCGCTGATCAGCGCGAATGTCGCCTGGCATTTCGGTTTCAGCTGGCAGGCGGGCGCGGTGC
TGCTGCTGAGTTGGGGGCTGCTGGGCATGAGCCTGATCGATGTGGATCACCAGTTGCTGCCGGATGCATTGGTGCTGCCA
CTGCTATGGCTGGGGCTTATGGTCAACAGCGCGGGCCTGCTGGCGACATTGCCCGATGCGTTATGGGGCGCGGTGTTTGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGTGACTTCAAGC
TACTCGCATTGTTGGGAGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGTTGATGGCGTCACTGCTCGGCGTGTTC
GTCGGCGTGCTGCTGATGCGCTGGCGCAAGACCGGAGCGTCGGTGCCGATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.518	96.528	0.507
pilD	Vibrio campbellii strain DS40M4	49.821	96.875	0.483
pilD	Acinetobacter baumannii D1279779	45.126	96.181	0.434
pilD	Acinetobacter nosocomialis M2	44.404	96.181	0.427
pilD	Neisseria gonorrhoeae MS11	47.287	89.583	0.424