Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J89_RS04010 Genome accession   NZ_CP027732
Coordinates   909489..910697 (-) Length   402 a.a.
NCBI ID   WP_124413816.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-35-07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 904489..915697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J89_RS03975 (C4J89_0789) - 905787..905960 (-) 174 WP_124361240.1 DUF3094 family protein -
  C4J89_RS03980 (C4J89_0790) - 906014..906643 (-) 630 WP_083360208.1 DUF1780 domain-containing protein -
  C4J89_RS03985 (C4J89_0791) - 906844..907533 (+) 690 WP_124413813.1 energy-coupling factor ABC transporter permease -
  C4J89_RS03990 (C4J89_0792) - 907597..907812 (+) 216 WP_124361242.1 hypothetical protein -
  C4J89_RS03995 (C4J89_0793) yacG 907809..908009 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  C4J89_RS04000 (C4J89_0794) coaE 908006..908629 (-) 624 WP_124413814.1 dephospho-CoA kinase -
  C4J89_RS04005 (C4J89_0795) pilD 908626..909492 (-) 867 WP_124413815.1 A24 family peptidase Machinery gene
  C4J89_RS04010 (C4J89_0796) pilC 909489..910697 (-) 1209 WP_124413816.1 type II secretion system F family protein Machinery gene
  C4J89_RS04015 (C4J89_0797) - 910897..911310 (+) 414 WP_124368933.1 pilin -
  C4J89_RS04025 (C4J89_0799) - 911624..911929 (+) 306 WP_124413817.1 DUF6388 family protein -
  C4J89_RS04030 (C4J89_0800) nadC 912031..912879 (-) 849 WP_124413818.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J89_RS04035 (C4J89_0801) - 913126..915282 (+) 2157 WP_124413819.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43429.92 Da        Isoelectric Point: 9.7776

>NTDB_id=279594 C4J89_RS04010 WP_124413816.1 909489..910697(-) (pilC) [Pseudomonas sp. R4-35-07]
MNDTSTIYTWQGINRKGRRVCGQTTGHDLALIKAQLRQQGICPERVRRKSSGLPSLAPPIQPADIALFTRQLATLLKAGI
PLMQAFDIIREGVENRALRELVEGLKQHVAAGNSLASTLRQYPRYFDELYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVASLVSAVLLMQVVPQFQTLFAGVDSPLPGFTLGVIALSDFLRQAWWMLALSLGVAIGAWRHAY
RVSPGFRLGLEAGLLKIPLAGKLLNKAAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDHMLEKVASHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=279594 C4J89_RS04010 WP_124413816.1 909489..910697(-) (pilC) [Pseudomonas sp. R4-35-07]
ATGAACGACACCTCAACGATCTACACCTGGCAAGGCATCAATCGCAAAGGCCGCCGGGTGTGCGGGCAAACCACGGGGCA
TGACCTGGCGCTGATCAAGGCGCAACTGCGCCAGCAAGGCATCTGCCCCGAGCGTGTGCGCAGGAAATCGTCGGGCCTGC
CAAGCCTGGCTCCGCCGATTCAGCCCGCAGACATTGCCTTGTTCACCCGCCAGTTGGCGACGCTGTTGAAGGCTGGCATC
CCCTTGATGCAAGCTTTCGACATCATCCGCGAGGGCGTCGAGAACCGAGCGCTGCGTGAGTTGGTCGAGGGTTTGAAACA
ACACGTCGCCGCCGGTAACAGCCTGGCCAGCACACTGCGCCAATACCCCCGTTATTTCGATGAGCTGTACTGCCACCTGA
TTGCCGCCGGTGAACAGGCAGGGGCCCTGGAAACACTGCTGGAGCGAGTGGCCATTCATCTGGAAAAAAGCCAACGGCTC
AAGACCAGAATCAAGAAAGCCATGACCTACCCTCTCGCCGTACTAGTGGTGGCCAGCCTGGTCAGCGCAGTATTGCTGAT
GCAGGTGGTGCCACAGTTCCAGACCCTGTTTGCCGGGGTCGACAGCCCATTGCCCGGTTTTACCCTGGGGGTCATCGCCC
TCTCCGACTTTCTGCGACAGGCCTGGTGGATGCTGGCGCTGAGCCTGGGGGTGGCAATAGGCGCCTGGCGCCACGCCTAC
CGTGTTTCGCCGGGTTTTCGCCTCGGGCTGGAGGCGGGTTTGTTGAAAATCCCCCTGGCAGGCAAACTGTTGAACAAAGC
AGCCGTCGCCCGCTACGCCCGCACGCTTTCAACCACCTTTGCGGCAGGTGTTCCCCTGGTGCAGGCACTGGGCTCAGTGG
CCGGCGCCGTCGGTAATGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCCACGGGTATGCAGTTGAAC
CAATCCATGGCCGCCAGCGGCCTGTTTCCCGGCATGGCGATCCAGATGACGGCAATCGGCGAAGAGTCCGGCACGCTGGA
CCACATGCTGGAAAAGGTCGCGAGCCATTACGAGGCCGACGTAGAAACCCTCGTCGATAACCTTACCAGCCTGATGGAAC
CGCTGATCATGGTCGTGCTGGGGAGCATTGTCGGTGCATTGGTGATTGCGATGTACCTGCCGGTGTTTCAATTAGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.789

99.005

0.572
  pilC Acinetobacter baylyi ADP1

51.515

98.507

0.507
  pilC Acinetobacter baumannii D1279779

50.38

98.259

0.495
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilG Neisseria gonorrhoeae MS11

40.42

94.776

0.383
  pilG Neisseria meningitidis 44/76-A

39.895

94.776

0.378
  pilC Vibrio cholerae strain A1552

38.131

98.507

0.376
  pilC Thermus thermophilus HB27

37.093

99.254

0.368
  pilC Vibrio campbellii strain DS40M4

37.056

98.01

0.363

Multiple sequence alignment