Detailed information NTG0279593

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J89_RS04005
• Genome accession: NZ_CP027732
• Coordinates: 908626..909492 (-)
• Length: 288 a.a.
• NCBI ID: WP_124413815.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R4-35-07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 903626..914492

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J89_RS03970 (C4J89_0788)	-	904428..905726 (-)	1299	WP_124361239.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J89_RS03975 (C4J89_0789)	-	905787..905960 (-)	174	WP_124361240.1	DUF3094 family protein	-
C4J89_RS03980 (C4J89_0790)	-	906014..906643 (-)	630	WP_083360208.1	DUF1780 domain-containing protein	-
C4J89_RS03985 (C4J89_0791)	-	906844..907533 (+)	690	WP_124413813.1	energy-coupling factor ABC transporter permease	-
C4J89_RS03990 (C4J89_0792)	-	907597..907812 (+)	216	WP_124361242.1	hypothetical protein	-
C4J89_RS03995 (C4J89_0793)	yacG	907809..908009 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J89_RS04000 (C4J89_0794)	coaE	908006..908629 (-)	624	WP_124413814.1	dephospho-CoA kinase	-
C4J89_RS04005 (C4J89_0795)	pilD	908626..909492 (-)	867	WP_124413815.1	A24 family peptidase	Machinery gene
C4J89_RS04010 (C4J89_0796)	pilC	909489..910697 (-)	1209	WP_124413816.1	type II secretion system F family protein	Machinery gene
C4J89_RS04015 (C4J89_0797)	-	910897..911310 (+)	414	WP_124368933.1	pilin	-
C4J89_RS04025 (C4J89_0799)	-	911624..911929 (+)	306	WP_124413817.1	DUF6388 family protein	-
C4J89_RS04030 (C4J89_0800)	nadC	912031..912879 (-)	849	WP_124413818.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31691.93 Da
• Isoelectric Point: 8.1746

>NTDB_id=279593 C4J89_RS04005 WP_124413815.1 908626..909492(-) (pilD) [Pseudomonas sp. R4-35-07]
MSALLGEQPWVFVAVALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPVAPAGQVYNLMHPGSCCPRCDQRIRPW
ENIPVLSYLMLKGRCSHCHATISARYPLTELACALISATVAWHFGFSWQAGAVLLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLMVNSVGLLATLPDALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
VGVLLMRWRKTGASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279593 C4J89_RS04005 WP_124413815.1 908626..909492(-) (pilD) [Pseudomonas sp. R4-35-07]
TTGAGTGCGTTGCTGGGCGAGCAGCCCTGGGTGTTTGTGGCCGTGGCGCTGCTGCTGGGCCTGATCGTTGGCAGTTTCCT
CAATGTGCTGGTCTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGCGCCCAAGCCCATGAAATTCTCGGCCTGCCGG
TCGCACCAGCGGGGCAGGTCTATAACCTGATGCACCCCGGCTCGTGCTGCCCGCGCTGCGACCAGCGGATTCGCCCCTGG
GAAAACATCCCCGTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCAGCCATTGCCATGCAACCATCAGCGCGCGTTACCC
TCTCACCGAACTGGCATGCGCGCTGATCAGCGCCACTGTCGCCTGGCATTTCGGTTTCAGCTGGCAGGCGGGCGCGGTGC
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGATGTGGATCACCAGCTGTTGCCGGATGCATTGGTGCTGCCG
CTGCTATGGCTGGGGCTTATGGTCAACAGCGTGGGCCTGCTGGCGACATTGCCCGATGCGTTATGGGGCGCGGTGTTTGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGTCATGGTGACTTCAAGC
TACTCGCATTGTTGGGAGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGCTGATGGCGTCACTGCTCGGCGTGTTC
GTCGGCGTGCTGCTGATGCGCTGGCGCAAGACCGGAGCGTCGGTGCCGATGCCATTTGGGCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.878	96.528	0.51
pilD	Vibrio campbellii strain DS40M4	49.462	96.875	0.479
pilD	Acinetobacter baumannii D1279779	46.35	95.139	0.441
pilD	Acinetobacter nosocomialis M2	45.62	95.139	0.434
pilD	Neisseria gonorrhoeae MS11	47.674	89.583	0.427