Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J90_RS04030 Genome accession   NZ_CP027731
Coordinates   914802..916010 (-) Length   402 a.a.
NCBI ID   WP_124419272.1    Uniprot ID   -
Organism   Pseudomonas sp. R2-60-08W     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 909802..921010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J90_RS03990 (C4J90_0788) - 909876..911174 (-) 1299 WP_124419268.1 NAD(P)/FAD-dependent oxidoreductase -
  C4J90_RS03995 (C4J90_0789) - 911235..911408 (-) 174 WP_124361240.1 DUF3094 family protein -
  C4J90_RS04000 (C4J90_0790) - 911462..912091 (-) 630 WP_083360208.1 DUF1780 domain-containing protein -
  C4J90_RS04005 (C4J90_0791) - 912292..912846 (+) 555 WP_124419269.1 energy-coupling factor ABC transporter permease -
  C4J90_RS04010 (C4J90_0792) - 912910..913125 (+) 216 WP_124361242.1 hypothetical protein -
  C4J90_RS04015 (C4J90_0793) yacG 913122..913322 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  C4J90_RS04020 (C4J90_0794) coaE 913319..913942 (-) 624 WP_124419270.1 dephospho-CoA kinase -
  C4J90_RS04025 (C4J90_0795) pilD 913939..914805 (-) 867 WP_124419271.1 A24 family peptidase Machinery gene
  C4J90_RS04030 (C4J90_0796) pilC 914802..916010 (-) 1209 WP_124419272.1 type II secretion system F family protein Machinery gene
  C4J90_RS04035 (C4J90_0797) - 916210..916623 (+) 414 WP_124421186.1 pilin -
  C4J90_RS04045 (C4J90_0799) - 916937..917242 (+) 306 WP_124413817.1 DUF6388 family protein -
  C4J90_RS04050 (C4J90_0800) nadC 917337..918185 (-) 849 WP_124419273.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J90_RS04055 (C4J90_0801) - 918432..920588 (+) 2157 WP_124419274.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43419.88 Da        Isoelectric Point: 9.7776

>NTDB_id=279569 C4J90_RS04030 WP_124419272.1 914802..916010(-) (pilC) [Pseudomonas sp. R2-60-08W]
MNDTSTIYTWQGINRKGRRVCGQTTGHDLALIKAQLRQQGICPERVRRKSSGLPSLAPPIQSADIALFTRQLATLLKAGI
PLMQAFDIIREGVENRALRELVEGLKQHVAAGNSLASTLRQYPRYFDELYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVASLVSAVLLMQVVPQFQTLFAGVDSPLPGFTLGVIALSDFLRQAWWMLALSLGVAIGAWRHAY
RVSPGFRLGLEAGLLKIPLAGKLLNKAAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDHMLEKVASHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=279569 C4J90_RS04030 WP_124419272.1 914802..916010(-) (pilC) [Pseudomonas sp. R2-60-08W]
ATGAACGACACCTCAACGATCTACACTTGGCAAGGCATCAACCGCAAAGGCCGCCGGGTGTGCGGGCAAACCACGGGGCA
TGACCTGGCGCTGATCAAGGCGCAACTGCGCCAGCAAGGCATCTGCCCCGAGCGTGTGCGCAGGAAATCGTCGGGCCTGC
CAAGCCTGGCTCCGCCGATTCAGTCCGCCGACATCGCCTTGTTCACCCGCCAGTTGGCGACGCTGTTGAAGGCTGGCATC
CCCTTGATGCAAGCTTTCGACATCATCCGCGAGGGCGTCGAGAACCGAGCGCTGCGTGAGTTGGTCGAGGGTTTGAAACA
ACACGTCGCCGCCGGTAACAGCCTGGCCAGCACACTGCGCCAATACCCCCGTTATTTCGATGAGCTGTACTGCCACCTGA
TTGCCGCCGGTGAACAGGCAGGTGCCCTGGAAACGCTGCTGGAGCGAGTGGCCATTCATCTGGAAAAAAGCCAACGGCTC
AAGACCAGAATCAAGAAAGCCATGACCTACCCTCTCGCCGTACTGGTGGTGGCCAGCCTGGTCAGCGCAGTGTTGCTGAT
GCAGGTGGTGCCGCAGTTCCAGACCCTGTTTGCCGGGGTCGACAGCCCATTGCCCGGTTTTACCCTGGGGGTCATCGCCC
TCTCCGACTTTCTGCGACAGGCCTGGTGGATGCTGGCGCTGAGCCTGGGGGTGGCAATAGGCGCCTGGCGCCACGCCTAC
CGTGTTTCGCCGGGTTTTCGCCTCGGGCTGGAGGCGGGTTTGTTGAAAATCCCCCTGGCAGGCAAACTGTTGAACAAAGC
AGCCGTCGCCCGCTACGCCCGCACGCTTTCAACCACCTTTGCGGCAGGTGTTCCCCTGGTGCAGGCCCTGGGCTCAGTGG
CCGGCGCCGTCGGTAACGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCCACGGGTATGCAGTTGAAC
CAATCCATGGCCGCCAGCGGCCTGTTTCCCGGCATGGCGATCCAGATGACGGCAATCGGCGAAGAGTCCGGCACGCTGGA
CCACATGCTGGAAAAGGTCGCGAGCCACTACGAGGCCGACGTAGAAACCCTCGTCGATAACCTTACCAGCCTGATGGAAC
CGCTGATTATGGTCGTGCTGGGGAGCATTGTCGGTGCATTGGTGATTGCGATGTACCTGCCGGTATTTCAATTAGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.538

99.005

0.57
  pilC Acinetobacter baylyi ADP1

51.263

98.507

0.505
  pilC Acinetobacter baumannii D1279779

50.38

98.259

0.495
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilG Neisseria gonorrhoeae MS11

40.42

94.776

0.383
  pilC Vibrio cholerae strain A1552

38.384

98.507

0.378
  pilG Neisseria meningitidis 44/76-A

39.895

94.776

0.378
  pilC Thermus thermophilus HB27

37.093

99.254

0.368
  pilC Vibrio campbellii strain DS40M4

37.056

98.01

0.363

Multiple sequence alignment