Detailed information NTG0279568

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J90_RS04025
• Genome accession: NZ_CP027731
• Coordinates: 913939..914805 (-)
• Length: 288 a.a.
• NCBI ID: WP_124419271.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R2-60-08W
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 908939..919805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J90_RS03990 (C4J90_0788)	-	909876..911174 (-)	1299	WP_124419268.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J90_RS03995 (C4J90_0789)	-	911235..911408 (-)	174	WP_124361240.1	DUF3094 family protein	-
C4J90_RS04000 (C4J90_0790)	-	911462..912091 (-)	630	WP_083360208.1	DUF1780 domain-containing protein	-
C4J90_RS04005 (C4J90_0791)	-	912292..912846 (+)	555	WP_124419269.1	energy-coupling factor ABC transporter permease	-
C4J90_RS04010 (C4J90_0792)	-	912910..913125 (+)	216	WP_124361242.1	hypothetical protein	-
C4J90_RS04015 (C4J90_0793)	yacG	913122..913322 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J90_RS04020 (C4J90_0794)	coaE	913319..913942 (-)	624	WP_124419270.1	dephospho-CoA kinase	-
C4J90_RS04025 (C4J90_0795)	pilD	913939..914805 (-)	867	WP_124419271.1	A24 family peptidase	Machinery gene
C4J90_RS04030 (C4J90_0796)	pilC	914802..916010 (-)	1209	WP_124419272.1	type II secretion system F family protein	Machinery gene
C4J90_RS04035 (C4J90_0797)	-	916210..916623 (+)	414	WP_124421186.1	pilin	-
C4J90_RS04045 (C4J90_0799)	-	916937..917242 (+)	306	WP_124413817.1	DUF6388 family protein	-
C4J90_RS04050 (C4J90_0800)	nadC	917337..918185 (-)	849	WP_124419273.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31742.04 Da
• Isoelectric Point: 8.3912

>NTDB_id=279568 C4J90_RS04025 WP_124419271.1 913939..914805(-) (pilD) [Pseudomonas sp. R2-60-08W]
MSALLGEQPWVYVGVALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPVVPAGPVYNLMHPGSCCPRCDQRIRPW
ENIPVLSYLMLKGRCSHCHATISARYPLTELACALISATVAWHFGLSWQAGAVLLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLMVNSVGLLATLPDALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
AGLLLMRWRKTRASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279568 C4J90_RS04025 WP_124419271.1 913939..914805(-) (pilD) [Pseudomonas sp. R2-60-08W]
TTGAGCGCGTTGCTCGGCGAGCAGCCCTGGGTGTATGTGGGCGTGGCGCTGCTGCTGGGCCTGATCGTTGGCAGTTTCCT
CAATGTGCTGGTCTGGCGCCTGCCCAAAATGCTTGAGCGGGAATGGCGCGCCCAGGCCCATGAAATTCTCGGCCTGCCCG
TCGTACCGGCGGGGCCGGTCTATAACCTCATGCACCCCGGCTCGTGCTGCCCGCGCTGCGACCAGCGGATTCGCCCCTGG
GAAAACATCCCCGTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCAGCCATTGCCATGCAACCATCAGCGCGCGTTACCC
CCTCACCGAACTGGCATGCGCGCTGATCAGCGCGACTGTCGCTTGGCACTTCGGTTTGAGTTGGCAGGCGGGCGCGGTGC
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGATGTGGATCACCAGTTGCTGCCGGATGCATTGGTGCTGCCA
CTGCTATGGCTGGGGCTTATGGTCAACAGCGTGGGCCTGCTGGCGACATTGCCCGATGCGTTATGGGGCGCAGTGTTCGG
GTACATGAGTCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGACTTCAAGC
TATTGGCGTTGTTAGGGGCCTGGGGTGGCTGGCAAATCCTGCCAATGACGCTGCTGATGGCGTCACTGCTCGGCGTGTTC
GCCGGGCTGCTCCTGATGCGCTGGCGCAAGACGCGAGCATCAGTGCCGATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.158	96.528	0.503
pilD	Vibrio campbellii strain DS40M4	48.746	96.875	0.472
pilD	Acinetobacter baumannii D1279779	45.848	96.181	0.441
pilD	Acinetobacter nosocomialis M2	45.126	96.181	0.434
pilD	Neisseria gonorrhoeae MS11	48.062	89.583	0.431