Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J91_RS04470 Genome accession   NZ_CP027730
Coordinates   989204..990412 (-) Length   402 a.a.
NCBI ID   WP_124361245.1    Uniprot ID   -
Organism   Pseudomonas sp. R3-52-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 984204..995412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J91_RS04435 (C4J91_0879) - 985502..985675 (-) 174 WP_124361240.1 DUF3094 family protein -
  C4J91_RS04440 (C4J91_0880) - 985729..986358 (-) 630 WP_083360208.1 DUF1780 domain-containing protein -
  C4J91_RS04445 (C4J91_0881) - 986559..987248 (+) 690 WP_124361241.1 energy-coupling factor ABC transporter permease -
  C4J91_RS04450 (C4J91_0882) - 987312..987527 (+) 216 WP_124361242.1 hypothetical protein -
  C4J91_RS04455 (C4J91_0883) yacG 987524..987724 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  C4J91_RS04460 (C4J91_0884) coaE 987721..988344 (-) 624 WP_124361243.1 dephospho-CoA kinase -
  C4J91_RS04465 (C4J91_0885) pilD 988341..989207 (-) 867 WP_124361244.1 A24 family peptidase Machinery gene
  C4J91_RS04470 (C4J91_0886) pilC 989204..990412 (-) 1209 WP_124361245.1 type II secretion system F family protein Machinery gene
  C4J91_RS04475 (C4J91_0887) - 990612..991025 (+) 414 WP_124365102.1 pilin -
  C4J91_RS04485 (C4J91_0889) - 991339..991644 (+) 306 WP_124361246.1 DUF6388 family protein -
  C4J91_RS04490 (C4J91_0890) nadC 991764..992612 (-) 849 WP_124361247.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J91_RS04495 (C4J91_0891) - 992859..995015 (+) 2157 WP_124361248.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43468.95 Da        Isoelectric Point: 9.9017

>NTDB_id=279545 C4J91_RS04470 WP_124361245.1 989204..990412(-) (pilC) [Pseudomonas sp. R3-52-08]
MNDTSTIYTWQGINRKGRRVCGQTTGHDLALIKAQLRQQGICPERVRRKSSGLPSLAPPIQSADIALFTRQLATLLKAGI
PLMQAFDIIREGVENRALRELVEGLKQHVATGNSLASTLRQYPRYFDELYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVASLVSAVLLMQVVPQFQTLFAGVDSPLPGFTLGVIALSDFLRQAWWMLALSLGVAIGAWRHAY
RVSPGFRLGLEAGLLKIPLAGKLLNKAAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLEKVASHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=279545 C4J91_RS04470 WP_124361245.1 989204..990412(-) (pilC) [Pseudomonas sp. R3-52-08]
ATGAACGACACCTCAACGATCTACACCTGGCAAGGCATCAACCGCAAAGGCCGCCGGGTGTGCGGGCAAACCACGGGGCA
TGACCTGGCGCTGATCAAGGCGCAACTGCGCCAGCAAGGCATCTGCCCCGAGCGTGTGCGCAGGAAATCGTCGGGCCTGC
CAAGCCTGGCTCCGCCGATTCAGTCCGCCGACATTGCCTTGTTCACCCGCCAGTTGGCGACGCTGTTGAAGGCTGGCATC
CCCTTGATGCAAGCTTTCGACATCATCCGCGAGGGCGTCGAGAACCGAGCGCTGCGTGAGTTGGTCGAGGGTTTGAAACA
ACACGTCGCCACCGGTAACAGCCTGGCCAGCACGCTGCGCCAATACCCCCGTTATTTCGATGAGCTGTACTGCCACCTGA
TTGCCGCCGGTGAACAGGCAGGGGCCCTGGAAACACTGCTGGAGCGAGTGGCCATTCATCTGGAAAAAAGCCAACGGCTC
AAGACCAGAATCAAGAAAGCCATGACCTACCCTCTCGCCGTACTAGTGGTGGCCAGCCTGGTCAGCGCAGTGTTGCTGAT
GCAGGTGGTGCCGCAGTTCCAGACCCTGTTTGCCGGGGTCGACAGCCCATTGCCCGGTTTTACCCTGGGGGTCATCGCCC
TCTCCGACTTTCTGCGACAGGCCTGGTGGATGCTGGCGCTGAGCCTGGGGGTGGCAATAGGCGCCTGGCGCCACGCCTAC
CGTGTTTCGCCGGGTTTTCGCCTCGGGCTGGAGGCGGGTTTGTTGAAAATCCCCCTGGCAGGCAAACTGTTGAACAAAGC
AGCCGTCGCCCGCTACGCCCGCACGCTTTCAACCACCTTTGCGGCAGGTGTTCCCCTGGTGCAGGCCCTGGGCTCAGTGG
CCGGCGCCGTCGGTAACGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCCACGGGTATGCAGTTGAAC
CAATCCATGGCCGCCAGCGGCCTGTTTCCCGGCATGGCGATCCAGATGACGGCAATCGGCGAAGAGTCCGGCACGCTGGA
CCGCATGCTGGAAAAGGTCGCGAGCCACTACGAGGCCGACGTAGAAACCCTCGTCGATAACCTTACCAGCCTGATGGAAC
CGCTGATCATGGTCGTGCTGGGGAGCATCGTCGGGGCGTTGGTGATTGCGATGTACCTGCCGGTATTTCAACTAGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.286

99.005

0.567
  pilC Acinetobacter baylyi ADP1

51.263

98.507

0.505
  pilC Acinetobacter baumannii D1279779

50.38

98.259

0.495
  pilC Legionella pneumophila strain ERS1305867

48.354

98.259

0.475
  pilG Neisseria gonorrhoeae MS11

40.42

94.776

0.383
  pilG Neisseria meningitidis 44/76-A

39.895

94.776

0.378
  pilC Vibrio cholerae strain A1552

38.131

98.507

0.376
  pilC Thermus thermophilus HB27

37.093

99.254

0.368
  pilC Vibrio campbellii strain DS40M4

36.802

98.01

0.361

Multiple sequence alignment