Detailed information NTG0279544

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J91_RS04465
• Genome accession: NZ_CP027730
• Coordinates: 988341..989207 (-)
• Length: 288 a.a.
• NCBI ID: WP_124361244.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R3-52-08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 983341..994207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J91_RS04430 (C4J91_0878)	-	984143..985441 (-)	1299	WP_124361239.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J91_RS04435 (C4J91_0879)	-	985502..985675 (-)	174	WP_124361240.1	DUF3094 family protein	-
C4J91_RS04440 (C4J91_0880)	-	985729..986358 (-)	630	WP_083360208.1	DUF1780 domain-containing protein	-
C4J91_RS04445 (C4J91_0881)	-	986559..987248 (+)	690	WP_124361241.1	energy-coupling factor ABC transporter permease	-
C4J91_RS04450 (C4J91_0882)	-	987312..987527 (+)	216	WP_124361242.1	hypothetical protein	-
C4J91_RS04455 (C4J91_0883)	yacG	987524..987724 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J91_RS04460 (C4J91_0884)	coaE	987721..988344 (-)	624	WP_124361243.1	dephospho-CoA kinase	-
C4J91_RS04465 (C4J91_0885)	pilD	988341..989207 (-)	867	WP_124361244.1	A24 family peptidase	Machinery gene
C4J91_RS04470 (C4J91_0886)	pilC	989204..990412 (-)	1209	WP_124361245.1	type II secretion system F family protein	Machinery gene
C4J91_RS04475 (C4J91_0887)	-	990612..991025 (+)	414	WP_124365102.1	pilin	-
C4J91_RS04485 (C4J91_0889)	-	991339..991644 (+)	306	WP_124361246.1	DUF6388 family protein	-
C4J91_RS04490 (C4J91_0890)	nadC	991764..992612 (-)	849	WP_124361247.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31746.03 Da
• Isoelectric Point: 8.3952

>NTDB_id=279544 C4J91_RS04465 WP_124361244.1 988341..989207(-) (pilD) [Pseudomonas sp. R3-52-08]
MSALLGEQPWVFVGVALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPVVPAGPVYNLMHPGSCCPRCDQRIRPW
ENIPVLSYLMLKGRCSHCHATISARYPLTELACALISATVAWHFGFSWQAGAVLLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLMVNSAGLLATLPEALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
AGLLLMRWRKTRASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279544 C4J91_RS04465 WP_124361244.1 988341..989207(-) (pilD) [Pseudomonas sp. R3-52-08]
TTGAGCGCGTTGCTCGGCGAGCAGCCTTGGGTGTTTGTGGGCGTGGCGCTGCTGCTGGGCCTGATCGTTGGCAGTTTCCT
CAATGTGCTGGTCTGGCGCCTGCCCAAAATGCTTGAGCGGGAATGGCGCGCCCAGGCCCATGAAATTCTCGGCCTGCCCG
TCGTACCGGCGGGGCCGGTCTATAACCTCATGCACCCCGGCTCGTGCTGCCCGCGCTGCGACCAGCGGATTCGCCCCTGG
GAAAACATCCCCGTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCAGCCATTGCCATGCAACCATCAGCGCGCGTTACCC
CCTCACCGAACTGGCATGCGCGCTGATCAGCGCGACTGTCGCCTGGCACTTCGGTTTCAGCTGGCAGGCGGGCGCGGTGC
TGTTGCTGAGTTGGGGATTGCTGGGCATGAGCCTGATCGACGTGGATCACCAACTGCTGCCGGATGCATTGGTGCTGCCA
CTGCTATGGCTGGGGCTTATGGTCAACAGCGCGGGCCTGCTGGCGACACTGCCCGAGGCTCTATGGGGCGCGGTGTTTGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGACTTCAAGC
TATTGGCGTTGTTAGGGGCCTGGGGTGGCTGGCAAATCCTGCCAATGACGCTGCTGATGGCGTCACTGCTCGGCGTGTTC
GCCGGGCTGCTCCTGATGCGCTGGCGCAAGACGCGAGCATCAGTGCCTATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.518	96.528	0.507
pilD	Vibrio campbellii strain DS40M4	49.462	96.875	0.479
pilD	Acinetobacter baumannii D1279779	45.487	96.181	0.437
pilD	Neisseria gonorrhoeae MS11	48.062	89.583	0.431
pilD	Acinetobacter nosocomialis M2	44.765	96.181	0.431