Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J92_RS04210 Genome accession   NZ_CP027729
Coordinates   936153..937361 (-) Length   402 a.a.
NCBI ID   WP_124403051.1    Uniprot ID   -
Organism   Pseudomonas sp. R3-18-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 931153..942361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J92_RS04175 (C4J92_0829) - 932451..932624 (-) 174 WP_124361240.1 DUF3094 family protein -
  C4J92_RS04180 (C4J92_0830) - 932678..933307 (-) 630 WP_083360208.1 DUF1780 domain-containing protein -
  C4J92_RS04185 (C4J92_0831) - 933508..934197 (+) 690 WP_124403048.1 energy-coupling factor ABC transporter permease -
  C4J92_RS04190 (C4J92_0832) - 934261..934476 (+) 216 WP_124361242.1 hypothetical protein -
  C4J92_RS04195 (C4J92_0833) yacG 934473..934673 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  C4J92_RS04200 (C4J92_0834) coaE 934670..935293 (-) 624 WP_124403049.1 dephospho-CoA kinase -
  C4J92_RS04205 (C4J92_0835) pilD 935290..936156 (-) 867 WP_124403050.1 A24 family peptidase Machinery gene
  C4J92_RS04210 (C4J92_0836) pilC 936153..937361 (-) 1209 WP_124403051.1 type II secretion system F family protein Machinery gene
  C4J92_RS04215 (C4J92_0837) - 937561..937974 (+) 414 WP_124368933.1 pilin -
  C4J92_RS04225 (C4J92_0839) - 938288..938593 (+) 306 WP_124403052.1 DUF6388 family protein -
  C4J92_RS04230 (C4J92_0840) nadC 938713..939561 (-) 849 WP_124403053.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J92_RS04235 (C4J92_0841) - 939808..941964 (+) 2157 WP_124403054.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43397.77 Da        Isoelectric Point: 9.7776

>NTDB_id=279521 C4J92_RS04210 WP_124403051.1 936153..937361(-) (pilC) [Pseudomonas sp. R3-18-08]
MNDTSTIYTWQGINRKGRRVCGQTTGHDLALIKAQLRQQGICPEHVRRKSSGLPSLAPPIQSADIALFTRQLATLLKAGI
PLLQAFDIIREGVENRALRELVEGLKQHVAAGNSLASTLRQYPRYFDELYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVASLVSAVLLMQVVPQFQTLFAGVDSPLPGFTLGVIALSDFLRQAWWMLALSLGVAIGAWRHAY
RVSPGFRHGLEAGLLKIPVAGKLLNKAAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLDKVASHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=279521 C4J92_RS04210 WP_124403051.1 936153..937361(-) (pilC) [Pseudomonas sp. R3-18-08]
ATGAACGACACCTCAACGATCTACACCTGGCAAGGCATCAACCGCAAAGGCCGCCGGGTGTGCGGGCAAACCACGGGGCA
TGACCTGGCGCTGATCAAGGCGCAACTGCGCCAGCAAGGCATCTGCCCCGAGCATGTGCGCAGGAAATCGTCGGGCCTGC
CAAGCCTGGCTCCGCCGATTCAGTCCGCCGACATCGCCCTGTTCACCCGCCAGTTGGCGACGCTGTTGAAGGCTGGCATC
CCCTTGTTGCAAGCTTTCGACATCATCCGCGAGGGCGTCGAGAACCGAGCGCTGCGCGAGTTGGTCGAGGGTCTGAAACA
ACACGTCGCCGCCGGTAACAGCCTGGCCAGCACGCTGCGCCAATACCCCCGTTATTTCGATGAGCTGTACTGCCACCTGA
TTGCCGCCGGTGAACAGGCAGGTGCCCTGGAAACGCTGCTGGAGCGAGTGGCCATTCATCTGGAAAAAAGCCAACGGCTC
AAGACCAGGATCAAGAAAGCCATGACCTACCCTCTCGCCGTACTGGTGGTGGCCAGCCTGGTCAGCGCAGTGTTGCTGAT
GCAGGTGGTGCCGCAGTTCCAGACCCTGTTCGCCGGGGTCGACAGCCCGTTGCCCGGTTTTACCCTGGGGGTCATCGCCC
TCTCCGACTTTCTGCGACAGGCCTGGTGGATGCTGGCGCTGAGCCTGGGCGTGGCAATAGGCGCCTGGCGCCACGCCTAC
CGTGTTTCGCCGGGTTTTCGCCACGGGCTGGAGGCGGGTTTGTTGAAAATTCCCGTGGCAGGCAAACTGTTGAACAAAGC
GGCCGTCGCCCGCTACGCCCGCACGCTTTCAACCACCTTTGCGGCAGGTGTTCCCCTGGTGCAGGCACTGGGCTCAGTGG
CCGGCGCCGTCGGTAACGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCAACGGGTATGCAGTTGAAT
CAATCCATGGCCGCCAGCGGGCTGTTTCCCGGCATGGCGATCCAGATGACAGCAATCGGCGAAGAGTCCGGCACGCTGGA
CCGCATGCTGGACAAGGTCGCGAGCCATTACGAGGCCGACGTAGAAACCCTCGTCGATAACCTTACCAGCCTGATGGAAC
CGCTGATAATGGTCGTGCTGGGGAGCATTGTCGGTGCATTGGTGATTGCGATGTACCTGCCGGTGTTTCAATTAGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.04

99.005

0.575
  pilC Acinetobacter baylyi ADP1

51.515

98.507

0.507
  pilC Acinetobacter baumannii D1279779

50.633

98.259

0.498
  pilC Legionella pneumophila strain ERS1305867

48.354

98.259

0.475
  pilC Vibrio cholerae strain A1552

38.636

98.507

0.381
  pilG Neisseria gonorrhoeae MS11

40.157

94.776

0.381
  pilG Neisseria meningitidis 44/76-A

39.633

94.776

0.376
  pilC Thermus thermophilus HB27

37.594

99.254

0.373
  pilC Vibrio campbellii strain DS40M4

36.842

99.254

0.366

Multiple sequence alignment