Detailed information NTG0279520

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J92_RS04205
• Genome accession: NZ_CP027729
• Coordinates: 935290..936156 (-)
• Length: 288 a.a.
• NCBI ID: WP_124403050.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R3-18-08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 930290..941156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J92_RS04170 (C4J92_0828)	-	931092..932390 (-)	1299	WP_124403047.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J92_RS04175 (C4J92_0829)	-	932451..932624 (-)	174	WP_124361240.1	DUF3094 family protein	-
C4J92_RS04180 (C4J92_0830)	-	932678..933307 (-)	630	WP_083360208.1	DUF1780 domain-containing protein	-
C4J92_RS04185 (C4J92_0831)	-	933508..934197 (+)	690	WP_124403048.1	energy-coupling factor ABC transporter permease	-
C4J92_RS04190 (C4J92_0832)	-	934261..934476 (+)	216	WP_124361242.1	hypothetical protein	-
C4J92_RS04195 (C4J92_0833)	yacG	934473..934673 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J92_RS04200 (C4J92_0834)	coaE	934670..935293 (-)	624	WP_124403049.1	dephospho-CoA kinase	-
C4J92_RS04205 (C4J92_0835)	pilD	935290..936156 (-)	867	WP_124403050.1	A24 family peptidase	Machinery gene
C4J92_RS04210 (C4J92_0836)	pilC	936153..937361 (-)	1209	WP_124403051.1	type II secretion system F family protein	Machinery gene
C4J92_RS04215 (C4J92_0837)	-	937561..937974 (+)	414	WP_124368933.1	pilin	-
C4J92_RS04225 (C4J92_0839)	-	938288..938593 (+)	306	WP_124403052.1	DUF6388 family protein	-
C4J92_RS04230 (C4J92_0840)	nadC	938713..939561 (-)	849	WP_124403053.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31701.97 Da
• Isoelectric Point: 8.3952

>NTDB_id=279520 C4J92_RS04205 WP_124403050.1 935290..936156(-) (pilD) [Pseudomonas sp. R3-18-08]
MSALLGEQPWVFVGVALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPVVPAGPVYNLMHPGSCCPRCDQRIRPW
ENIPVLSYLMLKGRCRHCHATISARYPLTELACALISATVAWHFGFSWQAGAVLLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLMVNSAGLLATLPEALWGAVFGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
VGVLLMRWRKTGASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279520 C4J92_RS04205 WP_124403050.1 935290..936156(-) (pilD) [Pseudomonas sp. R3-18-08]
TTGAGTGCGTTGCTGGGCGAGCAGCCCTGGGTGTTTGTGGGCGTGGCGCTGCTGCTGGGCCTGATCGTTGGCAGTTTCCT
CAATGTGCTGGTCTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGCGCCCAAGCCCATGAAATTCTCGGCCTGCCCG
TCGTACCGGCGGGGCCGGTCTATAACCTCATGCACCCCGGCTCGTGCTGCCCGCGCTGCGACCAGCGGATTCGCCCCTGG
GAAAACATCCCCGTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCAGACATTGCCATGCAACCATCAGCGCGCGTTACCC
CCTCACCGAACTGGCATGCGCGCTGATCAGCGCCACTGTCGCCTGGCACTTCGGTTTCAGCTGGCAGGCGGGCGCGGTGC
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGATGTGGATCACCAGTTGCTGCCGGATGCATTGGTGCTGCCA
TTGCTCTGGCTGGGGCTTATGGTCAACAGCGCGGGCCTGCTGGCGACATTGCCCGAGGCGTTATGGGGCGCGGTGTTTGG
CTACATGAGCCTTTGGAGCGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGATGGCATGGGCCATGGTGACTTCAAGC
TACTCGCATTGTTGGGAGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGTTGATGGCGTCGCTGCTCGGCGTGTTC
GTCGGCGTGCTGCTGATGCGCTGGCGCAAGACCGGAGCGTCGGTGCCGATGCCATTTGGCCCCTGCTTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.158	96.528	0.503
pilD	Vibrio campbellii strain DS40M4	49.462	96.875	0.479
pilD	Acinetobacter baumannii D1279779	45.487	96.181	0.437
pilD	Acinetobacter nosocomialis M2	44.765	96.181	0.431
pilD	Neisseria gonorrhoeae MS11	47.674	89.583	0.427