Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J93_RS04055 Genome accession   NZ_CP027728
Coordinates   927840..929048 (-) Length   402 a.a.
NCBI ID   WP_124428656.1    Uniprot ID   -
Organism   Pseudomonas sp. R2-37-08W     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 922840..934048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J93_RS04020 (C4J93_0808) - 924138..924311 (-) 174 WP_124361240.1 DUF3094 family protein -
  C4J93_RS04025 (C4J93_0809) - 924365..924994 (-) 630 WP_083360208.1 DUF1780 domain-containing protein -
  C4J93_RS04030 (C4J93_0810) - 925195..925884 (+) 690 WP_124428654.1 energy-coupling factor ABC transporter permease -
  C4J93_RS04035 (C4J93_0811) - 925948..926163 (+) 216 WP_124361242.1 hypothetical protein -
  C4J93_RS04040 (C4J93_0812) yacG 926160..926360 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  C4J93_RS04045 (C4J93_0813) coaE 926357..926980 (-) 624 WP_124409022.1 dephospho-CoA kinase -
  C4J93_RS04050 (C4J93_0814) pilD 926977..927843 (-) 867 WP_124428655.1 A24 family peptidase Machinery gene
  C4J93_RS04055 (C4J93_0815) pilC 927840..929048 (-) 1209 WP_124428656.1 type II secretion system F family protein Machinery gene
  C4J93_RS04060 (C4J93_0816) - 929248..929661 (+) 414 WP_124430837.1 pilin -
  C4J93_RS04070 (C4J93_0818) - 929949..930254 (+) 306 WP_124361246.1 DUF6388 family protein -
  C4J93_RS04075 (C4J93_0819) nadC 930374..931222 (-) 849 WP_124428657.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J93_RS04080 (C4J93_0821) - 931471..933627 (+) 2157 WP_124428658.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43423.80 Da        Isoelectric Point: 10.0099

>NTDB_id=279497 C4J93_RS04055 WP_124428656.1 927840..929048(-) (pilC) [Pseudomonas sp. R2-37-08W]
MNDTSTVYTWQGINRKGRRVSGQTTGHDLALIKAQLRQQGICPERVRRKSSGLPSLAPPIQPADIALFTRQLATLLKAGI
PLLQAFDIIREGVENRALRELVEGLKQHVAAGNSLASTLRQYPRYFDELYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVASLVSAVLLMQVVPQFQNLFAGVDSPLPGFTLGVIALSDFLRQAWWMLALSLGVAIGAWRHAY
RVSPGFRHGLEAGLLKIPLAGKLLNKAAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLDKVASHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=279497 C4J93_RS04055 WP_124428656.1 927840..929048(-) (pilC) [Pseudomonas sp. R2-37-08W]
ATGAACGACACCTCAACGGTCTACACCTGGCAAGGCATCAACCGCAAAGGCCGCCGGGTGAGCGGACAAACCACGGGGCA
TGACCTGGCGCTGATCAAGGCGCAACTGCGCCAGCAAGGCATCTGCCCCGAGCGTGTGCGCAGGAAATCGTCGGGCCTGC
CAAGCCTGGCTCCGCCGATTCAACCCGCAGACATTGCCTTGTTCACCCGCCAGTTGGCGACGCTATTGAAGGCTGGCATC
CCCTTGTTGCAAGCCTTCGACATCATCCGCGAGGGCGTCGAGAACCGAGCGCTGCGCGAGTTGGTCGAGGGTTTGAAACA
ACACGTCGCCGCCGGTAACAGCCTGGCCAGCACGCTGCGCCAATACCCCCGTTATTTCGATGAGCTGTACTGCCACCTGA
TTGCCGCCGGTGAACAGGCAGGTGCCCTGGAAACGCTGCTGGAGCGAGTGGCCATTCATCTGGAAAAAAGCCAACGGCTC
AAGACCAGAATCAAGAAAGCCATGACCTACCCTCTCGCCGTACTGGTGGTGGCCAGCCTGGTCAGCGCAGTGTTGCTGAT
GCAGGTAGTGCCGCAATTCCAGAACCTGTTCGCCGGGGTCGACAGCCCGCTGCCCGGTTTTACCCTGGGGGTCATCGCCC
TCTCCGACTTTCTGCGACAGGCCTGGTGGATGCTGGCGCTGAGCCTGGGCGTGGCAATAGGCGCCTGGCGCCACGCCTAC
CGTGTTTCGCCGGGTTTTCGCCACGGGCTGGAGGCGGGTTTGTTGAAAATCCCCCTGGCAGGCAAACTGTTGAACAAAGC
GGCCGTCGCCCGCTACGCCCGCACGCTTTCAACCACCTTTGCGGCAGGTGTTCCCCTGGTGCAGGCACTGGGCTCAGTGG
CCGGCGCCGTCGGTAACGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCAACGGGTATGCAGTTGAAT
CAATCCATGGCCGCCAGCGGGCTGTTTCCCGGCATGGCGATCCAGATGACAGCAATCGGCGAAGAGTCCGGCACGCTGGA
CCGCATGCTGGACAAGGTCGCGAGCCATTACGAGGCCGACGTAGAAACCCTCGTCGATAACCTTACCAGCCTGATGGAAC
CACTGATTATGGTCGTGCTGGGGAGCATTGTCGGTGCATTGGTGATTGCGATGTACCTGCCGGTGTTTCAATTAGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.291

99.005

0.577
  pilC Acinetobacter baylyi ADP1

52.02

98.507

0.512
  pilC Acinetobacter baumannii D1279779

50.633

98.259

0.498
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilC Vibrio cholerae strain A1552

38.442

99.005

0.381
  pilG Neisseria gonorrhoeae MS11

40.157

94.776

0.381
  pilG Neisseria meningitidis 44/76-A

39.633

94.776

0.376
  pilC Thermus thermophilus HB27

37.594

99.254

0.373
  pilC Vibrio campbellii strain DS40M4

37.056

98.01

0.363

Multiple sequence alignment