Detailed information NTG0279496

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J93_RS04050
• Genome accession: NZ_CP027728
• Coordinates: 926977..927843 (-)
• Length: 288 a.a.
• NCBI ID: WP_124428655.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R2-37-08W
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 921977..932843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J93_RS04015 (C4J93_0807)	-	922779..924077 (-)	1299	WP_124361239.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J93_RS04020 (C4J93_0808)	-	924138..924311 (-)	174	WP_124361240.1	DUF3094 family protein	-
C4J93_RS04025 (C4J93_0809)	-	924365..924994 (-)	630	WP_083360208.1	DUF1780 domain-containing protein	-
C4J93_RS04030 (C4J93_0810)	-	925195..925884 (+)	690	WP_124428654.1	energy-coupling factor ABC transporter permease	-
C4J93_RS04035 (C4J93_0811)	-	925948..926163 (+)	216	WP_124361242.1	hypothetical protein	-
C4J93_RS04040 (C4J93_0812)	yacG	926160..926360 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J93_RS04045 (C4J93_0813)	coaE	926357..926980 (-)	624	WP_124409022.1	dephospho-CoA kinase	-
C4J93_RS04050 (C4J93_0814)	pilD	926977..927843 (-)	867	WP_124428655.1	A24 family peptidase	Machinery gene
C4J93_RS04055 (C4J93_0815)	pilC	927840..929048 (-)	1209	WP_124428656.1	type II secretion system F family protein	Machinery gene
C4J93_RS04060 (C4J93_0816)	-	929248..929661 (+)	414	WP_124430837.1	pilin	-
C4J93_RS04070 (C4J93_0818)	-	929949..930254 (+)	306	WP_124361246.1	DUF6388 family protein	-
C4J93_RS04075 (C4J93_0819)	nadC	930374..931222 (-)	849	WP_124428657.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31664.91 Da
• Isoelectric Point: 8.1746

>NTDB_id=279496 C4J93_RS04050 WP_124428655.1 926977..927843(-) (pilD) [Pseudomonas sp. R2-37-08W]
MSALLGEQPWVFVGVALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPVVPAGPVYNLMHPGSCCPRCDQRIRPW
ENIPLLSYLMLKGRCSHCHATIGARYPFTELACALISATVAWHFGFSWQAGAVLLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLMVNSAGLLATLPDALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
VGVLLMRWRKTGASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279496 C4J93_RS04050 WP_124428655.1 926977..927843(-) (pilD) [Pseudomonas sp. R2-37-08W]
TTGAGTGCGTTGCTGGGCGAGCAGCCCTGGGTGTTTGTGGGCGTGGCGCTGCTGCTGGGCCTGATCGTTGGCAGTTTCCT
CAATGTGCTGGTCTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGCGCCCAAGCCCATGAAATTCTCGGCCTGCCCG
TCGTACCGGCGGGGCCGGTCTATAACCTCATGCACCCCGGCTCGTGCTGCCCGCGCTGCGACCAGCGGATTCGCCCCTGG
GAAAACATCCCCCTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCAGCCATTGCCATGCAACCATCGGCGCACGTTACCC
CTTCACCGAACTGGCATGCGCGCTGATCAGCGCCACTGTTGCCTGGCACTTCGGTTTCAGCTGGCAGGCGGGCGCGGTGC
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGACGTGGATCACCAGTTGCTGCCGGATGCATTGGTGCTGCCA
CTGCTATGGCTGGGGCTTATGGTCAACAGTGCGGGCCTGCTGGCGACACTGCCCGATGCGTTATGGGGCGCGGTGTTTGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGTGACTTCAAGC
TACTCGCATTGTTGGGAGCCTGGGGTGGCTGGCAGATCCTGCCGATGACGCTGTTGATGGCATCACTGCTCGGCGTGTTC
GTCGGCGTGCTGCTGATGCGCTGGCGCAAGACCGGAGCGTCGGTGCCGATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.518	96.528	0.507
pilD	Vibrio campbellii strain DS40M4	49.104	96.875	0.476
pilD	Acinetobacter baumannii D1279779	44.765	96.181	0.431
pilD	Acinetobacter nosocomialis M2	44.765	96.181	0.431
pilD	Neisseria gonorrhoeae MS11	46.899	89.583	0.42