Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J97_RS03980 Genome accession   NZ_CP027724
Coordinates   911119..912327 (-) Length   402 a.a.
NCBI ID   WP_124422339.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain L1-3-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 906119..917327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J97_RS03940 (C4J97_0796) - 906129..907427 (-) 1299 WP_057726147.1 NAD(P)/FAD-dependent oxidoreductase -
  C4J97_RS03945 (C4J97_0797) - 907488..907661 (-) 174 WP_057726145.1 DUF3094 family protein -
  C4J97_RS03950 (C4J97_0798) - 907715..908344 (-) 630 WP_124422334.1 DUF1780 domain-containing protein -
  C4J97_RS03955 (C4J97_0799) - 908474..909163 (+) 690 WP_124422335.1 energy-coupling factor ABC transporter permease -
  C4J97_RS03960 (C4J97_0800) - 909227..909442 (+) 216 WP_124422336.1 hypothetical protein -
  C4J97_RS03965 (C4J97_0801) yacG 909439..909639 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  C4J97_RS03970 (C4J97_0802) coaE 909636..910259 (-) 624 WP_124422337.1 dephospho-CoA kinase -
  C4J97_RS03975 (C4J97_0803) pilD 910256..911122 (-) 867 WP_124422338.1 prepilin peptidase Machinery gene
  C4J97_RS03980 (C4J97_0804) pilC 911119..912327 (-) 1209 WP_124422339.1 type II secretion system F family protein Machinery gene
  C4J97_RS03985 (C4J97_0805) - 912526..912939 (+) 414 WP_124425575.1 pilin -
  C4J97_RS03995 (C4J97_0807) - 913256..913561 (+) 306 WP_124422340.1 DUF6388 family protein -
  C4J97_RS04000 (C4J97_0808) nadC 913681..914529 (-) 849 WP_124422341.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J97_RS04005 (C4J97_0810) - 914773..916929 (+) 2157 WP_124422342.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43362.78 Da        Isoelectric Point: 9.7950

>NTDB_id=279402 C4J97_RS03980 WP_124422339.1 911119..912327(-) (pilC) [Pseudomonas orientalis strain L1-3-08]
MNDRSTIYAWQGINRKGRRVCGKIAGHDLALVKARLREQGICAERVCRQSPGLPSLAAPIRPADIALFTRQLATLLKAGI
ALLQAFDIISEGVENRPLRELVKGLQQQVASGNSLTGTLRQHPRYFDDLYCHLVAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMIYPLAVLVVAGLVSAVLLMQVVPQFQNLFAGVDTPLPGFTLGVIALSDFLRQAWWLLALGLGAAIGGLRHAY
RVSAQFRYRLEAGLLKVPLTGKLSSKAAVARYARTLATNFAAGVPLVQALDSVAGAVGNGPFRQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDHMLEKVANHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=279402 C4J97_RS03980 WP_124422339.1 911119..912327(-) (pilC) [Pseudomonas orientalis strain L1-3-08]
ATGAACGACCGCTCGACGATCTACGCCTGGCAAGGCATCAACCGCAAAGGCCGCAGGGTGTGCGGGAAAATCGCAGGGCA
TGACCTTGCGTTGGTCAAGGCGCGACTGCGCGAGCAAGGGATCTGCGCCGAGCGTGTGTGCAGGCAATCGCCAGGCCTGC
CAAGCCTGGCTGCGCCGATACGGCCGGCGGACATCGCCCTGTTCACCCGCCAGTTGGCGACGCTGTTGAAGGCGGGTATC
GCGCTGCTGCAAGCCTTCGACATCATCAGCGAGGGCGTCGAAAACCGCCCGCTGCGCGAGCTGGTCAAGGGCTTGCAACA
ACAGGTCGCGTCCGGTAACAGCCTGACCGGCACGCTGCGCCAACACCCCCGTTACTTCGACGACCTGTACTGCCACCTGG
TTGCCGCCGGTGAACAGGCCGGCGCACTGGAAACGCTGCTGGAGCGCGTGGCCATTCATCTGGAAAAAAGCCAGCGGCTA
AAGACCAGAATCAAGAAAGCCATGATCTACCCGCTTGCGGTGCTGGTGGTGGCCGGCCTGGTCAGCGCAGTATTGTTGAT
GCAGGTGGTGCCGCAGTTCCAGAACCTGTTCGCCGGAGTCGACACCCCATTGCCCGGTTTTACCCTGGGGGTCATCGCCC
TCTCCGATTTTCTGCGACAGGCCTGGTGGCTACTGGCGCTCGGCCTGGGCGCAGCCATCGGCGGGCTGCGCCACGCCTAT
CGTGTTTCTGCGCAGTTTCGCTACCGGCTGGAGGCGGGTTTGTTGAAAGTCCCCCTGACAGGCAAACTATCGAGCAAAGC
TGCCGTCGCCCGCTACGCCCGTACGCTTGCAACCAACTTTGCGGCAGGCGTTCCCCTGGTGCAGGCGTTGGACTCAGTGG
CCGGCGCCGTCGGTAATGGCCCTTTCAGACAGGCAATCGAACATATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCCATGGCCGCCAGCGGCCTGTTTCCAGGTATGGCGATCCAAATGACGGCAATCGGCGAAGAATCCGGCACCCTGGA
CCACATGCTGGAAAAGGTCGCAAATCATTACGAGGCCGACGTAGAGACCCTCGTCGATAACCTCACCAGCTTGATGGAAC
CGCTGATCATGGTGGTGCTGGGGAGCATCGTCGGCGCGCTGGTGATTGCAATGTACCTGCCGGTGTTTCAACTGGGTTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.03

99.005

0.555
  pilC Acinetobacter baylyi ADP1

50.758

98.507

0.5
  pilC Acinetobacter baumannii D1279779

48.608

98.259

0.478
  pilC Legionella pneumophila strain ERS1305867

46.329

98.259

0.455
  pilG Neisseria gonorrhoeae MS11

40.945

94.776

0.388
  pilC Thermus thermophilus HB27

38.346

99.254

0.381
  pilC Vibrio campbellii strain DS40M4

38.25

99.502

0.381
  pilG Neisseria meningitidis 44/76-A

40.157

94.776

0.381
  pilC Vibrio cholerae strain A1552

38.325

98.01

0.376

Multiple sequence alignment