Detailed information NTG0279401

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J97_RS03975
• Genome accession: NZ_CP027724
• Coordinates: 910256..911122 (-)
• Length: 288 a.a.
• NCBI ID: WP_124422338.1
• Uniprot ID: -
• Organism: Pseudomonas orientalis strain L1-3-08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 905256..916122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J97_RS03940 (C4J97_0796)	-	906129..907427 (-)	1299	WP_057726147.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J97_RS03945 (C4J97_0797)	-	907488..907661 (-)	174	WP_057726145.1	DUF3094 family protein	-
C4J97_RS03950 (C4J97_0798)	-	907715..908344 (-)	630	WP_124422334.1	DUF1780 domain-containing protein	-
C4J97_RS03955 (C4J97_0799)	-	908474..909163 (+)	690	WP_124422335.1	energy-coupling factor ABC transporter permease	-
C4J97_RS03960 (C4J97_0800)	-	909227..909442 (+)	216	WP_124422336.1	hypothetical protein	-
C4J97_RS03965 (C4J97_0801)	yacG	909439..909639 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
C4J97_RS03970 (C4J97_0802)	coaE	909636..910259 (-)	624	WP_124422337.1	dephospho-CoA kinase	-
C4J97_RS03975 (C4J97_0803)	pilD	910256..911122 (-)	867	WP_124422338.1	prepilin peptidase	Machinery gene
C4J97_RS03980 (C4J97_0804)	pilC	911119..912327 (-)	1209	WP_124422339.1	type II secretion system F family protein	Machinery gene
C4J97_RS03985 (C4J97_0805)	-	912526..912939 (+)	414	WP_124425575.1	pilin	-
C4J97_RS03995 (C4J97_0807)	-	913256..913561 (+)	306	WP_124422340.1	DUF6388 family protein	-
C4J97_RS04000 (C4J97_0808)	nadC	913681..914529 (-)	849	WP_124422341.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31724.09 Da
• Isoelectric Point: 8.3899

>NTDB_id=279401 C4J97_RS03975 WP_124422338.1 910256..911122(-) (pilD) [Pseudomonas orientalis strain L1-3-08]
MIGLLGEQPWAFVGVALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPAAPAGPAYNLMRPNSCCPRCDQPIRPW
ENIPLLSYLMLKGRCTHCRATISARYPLTELACALISATVAWHLGFGWQAGAVMLLSWGLLGMSLIDVDHQLLPDVMVLP
LLWLGLVLNSLGLLATLPDALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
VGLLMMRWRKTQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279401 C4J97_RS03975 WP_124422338.1 910256..911122(-) (pilD) [Pseudomonas orientalis strain L1-3-08]
TTGATCGGGTTGCTGGGCGAGCAGCCCTGGGCGTTTGTCGGCGTGGCGCTGGTGCTGGGCCTGATCGTCGGCAGTTTTCT
CAATGTGCTGGTATGGCGCCTGCCCAAAATGCTCGAACGCGAATGGCGCGCCCAGGCCCATGAGATCCTCGGCCTGCCTG
CCGCGCCAGCGGGGCCGGCCTATAACCTGATGCGCCCGAACTCATGCTGCCCGCGCTGCGACCAGCCGATTCGTCCCTGG
GAAAATATTCCCCTGCTCAGCTACCTGATGCTCAAGGGTCGTTGCACCCATTGCCGTGCAACCATCAGCGCGCGCTATCC
CCTCACCGAACTGGCCTGTGCGCTGATATCCGCCACCGTCGCCTGGCACTTGGGTTTTGGCTGGCAGGCCGGCGCGGTGA
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGACGTGGATCACCAGTTGCTGCCGGATGTGATGGTGCTGCCG
CTGCTGTGGCTGGGGCTTGTCCTCAACAGCCTGGGCCTGCTGGCGACGTTGCCCGATGCATTATGGGGCGCGGTGTTCGG
TTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGACTTCAAGC
TATTGGCGCTGCTGGGTGCCTGGGGCGGCTGGCAGATACTGCCGATGACGCTGCTGATGGCGTCACTGCTCGGCGTGTTT
GTCGGGCTGCTGATGATGCGCTGGCGCAAGACGCAGGTGTCGGCACCGATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.878	96.528	0.51
pilD	Vibrio campbellii strain DS40M4	48.387	96.875	0.469
pilD	Neisseria gonorrhoeae MS11	48.289	91.319	0.441
pilD	Acinetobacter nosocomialis M2	45.421	94.792	0.431
pilD	Acinetobacter baumannii D1279779	45.421	94.792	0.431