Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4K40_RS26880 Genome accession   NZ_CP027705
Coordinates   5827790..5829007 (+) Length   405 a.a.
NCBI ID   WP_053134597.1    Uniprot ID   -
Organism   Pseudomonas sp. CMR5c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5822790..5834007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K40_RS26865 (C4K40_5451) - 5823380..5826298 (+) 2919 WP_053134592.1 DUF748 domain-containing protein -
  C4K40_RS26870 (C4K40_5452) - 5826514..5826870 (-) 357 WP_022641055.1 BON domain-containing protein -
  C4K40_RS26875 (C4K40_5453) - 5827086..5827502 (-) 417 WP_022641056.1 pilin -
  C4K40_RS26880 (C4K40_5454) pilC 5827790..5829007 (+) 1218 WP_053134597.1 type II secretion system F family protein Machinery gene
  C4K40_RS26885 (C4K40_5455) pilD 5829010..5829882 (+) 873 WP_053134598.1 A24 family peptidase Machinery gene
  C4K40_RS26890 (C4K40_5456) coaE 5829879..5830502 (+) 624 WP_053134599.1 dephospho-CoA kinase -
  C4K40_RS26895 (C4K40_5457) yacG 5830499..5830702 (+) 204 WP_022641061.1 DNA gyrase inhibitor YacG -
  C4K40_RS26900 (C4K40_5458) - 5830722..5830937 (-) 216 WP_022641062.1 hypothetical protein -
  C4K40_RS26905 (C4K40_5459) - 5831001..5831690 (-) 690 WP_022641063.1 energy-coupling factor ABC transporter permease -
  C4K40_RS26910 (C4K40_5460) - 5831687..5832154 (-) 468 WP_053134602.1 hypothetical protein -
  C4K40_RS26915 (C4K40_5461) - 5832305..5832934 (+) 630 WP_022641065.1 DUF1780 domain-containing protein -
  C4K40_RS26920 (C4K40_5462) - 5833124..5833297 (+) 174 WP_022641066.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44004.39 Da        Isoelectric Point: 10.1992

>NTDB_id=278922 C4K40_RS26880 WP_053134597.1 5827790..5829007(+) (pilC) [Pseudomonas sp. CMR5c]
MTVQPPATSTYVWQGTDNQGHALQGELVAASPALARARLRRQGIVPSRIRRKSSSLPRLGQRIRPRDIALFARQLATLFQ
AGVPLLQSLEIIAESFEQPPMRQLLASLKRDIEAGSSLASALRRHPRHFDPLYCDLVEAGEQAGALDTLLDRVASYQEQS
ERLKARLYKAMVYPLAVIGVAIIVSSILLLKVVPQFQNLFAGFNAELPLLTRWVIGLSHFLQEQGASLLAAGLGLGFGVR
LAYRRSPRLRDAVDIVLLRLPLTGTLLNKAAVARLARTLATTFAAGVPLVQALESVAGASGNSVHRRAVERIQVQVASGM
QLNFAMRASGVFPEMAIQMTAIGEESGTLDHLLEKIAMHYESEVDNLVDSLTSLMEPLIMVLLGSIVGALVLAMYLPIFQ
LGTAN

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=278922 C4K40_RS26880 WP_053134597.1 5827790..5829007(+) (pilC) [Pseudomonas sp. CMR5c]
ATGACGGTACAACCACCCGCCACCAGCACCTATGTCTGGCAGGGCACCGATAACCAGGGCCATGCCCTGCAAGGCGAATT
GGTTGCCGCCAGCCCGGCATTGGCCAGGGCCCGCCTGCGCCGACAGGGCATAGTCCCGAGCCGGATCCGCCGCAAGTCCT
CCAGCCTGCCGCGCCTGGGACAACGAATCAGGCCCCGGGACATCGCCCTGTTCGCCCGGCAACTGGCGACCTTGTTCCAG
GCCGGCGTACCCCTGCTGCAATCCCTGGAAATAATCGCCGAAAGCTTCGAACAGCCGCCCATGCGCCAACTGCTGGCCAG
CCTCAAGCGCGATATCGAGGCTGGCTCCAGCCTGGCCAGCGCATTGCGCCGGCACCCGCGCCATTTCGACCCGCTGTACT
GCGACCTGGTGGAAGCCGGGGAGCAGGCCGGGGCCCTGGATACCCTGCTGGACCGGGTCGCCAGCTACCAGGAACAGAGC
GAGCGCCTCAAGGCCCGGTTGTACAAGGCCATGGTCTATCCCCTGGCGGTGATCGGAGTGGCGATCATCGTCAGCAGCAT
CCTGCTGCTCAAGGTCGTCCCGCAGTTCCAGAACCTGTTCGCCGGCTTCAATGCCGAACTCCCCCTGCTGACCCGCTGGG
TCATCGGCCTCTCGCACTTTCTCCAGGAACAAGGCGCGAGCCTACTGGCTGCCGGCCTGGGACTGGGTTTCGGCGTGCGC
CTGGCCTATCGCCGCTCGCCCCGCCTGCGCGATGCCGTGGATATCGTCCTGCTGCGCCTGCCCTTGACCGGCACCTTGCT
GAACAAGGCCGCCGTGGCCCGCCTGGCCCGGACCCTGGCCACCACCTTCGCCGCCGGCGTGCCGCTGGTACAGGCCCTGG
AATCGGTGGCGGGGGCCAGCGGCAACAGCGTGCATCGCCGGGCGGTGGAGAGGATCCAGGTACAAGTCGCCAGCGGCATG
CAATTGAACTTCGCCATGCGCGCCAGCGGCGTCTTCCCGGAAATGGCGATCCAGATGACCGCCATTGGCGAAGAGTCCGG
GACCCTCGATCATCTGCTGGAAAAAATCGCCATGCACTATGAGAGCGAGGTGGACAACCTGGTGGACAGCCTCACCAGCC
TCATGGAGCCTTTGATCATGGTGCTGCTGGGCAGTATCGTCGGAGCCCTGGTGCTAGCCATGTACCTGCCCATCTTTCAA
CTCGGTACAGCGAACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

97.778

0.56
  pilC Acinetobacter baylyi ADP1

52.778

97.778

0.516
  pilC Acinetobacter baumannii D1279779

52.525

97.778

0.514
  pilC Legionella pneumophila strain ERS1305867

46.42

100

0.464
  pilC Vibrio campbellii strain DS40M4

41.045

99.259

0.407
  pilG Neisseria meningitidis 44/76-A

41.25

98.765

0.407
  pilG Neisseria gonorrhoeae MS11

41.31

98.025

0.405
  pilC Vibrio cholerae strain A1552

41.624

97.284

0.405
  pilC Thermus thermophilus HB27

38.945

98.272

0.383

Multiple sequence alignment