Detailed information NTG0278923

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K40_RS26885
• Genome accession: NZ_CP027705
• Coordinates: 5829010..5829882 (+)
• Length: 290 a.a.
• NCBI ID: WP_053134598.1
• Uniprot ID: A0A7X1U7E3
• Organism: Pseudomonas sp. CMR5c
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5824010..5834882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K40_RS26870 (C4K40_5452)	-	5826514..5826870 (-)	357	WP_022641055.1	BON domain-containing protein	-
C4K40_RS26875 (C4K40_5453)	-	5827086..5827502 (-)	417	WP_022641056.1	pilin	-
C4K40_RS26880 (C4K40_5454)	pilC	5827790..5829007 (+)	1218	WP_053134597.1	type II secretion system F family protein	Machinery gene
C4K40_RS26885 (C4K40_5455)	pilD	5829010..5829882 (+)	873	WP_053134598.1	A24 family peptidase	Machinery gene
C4K40_RS26890 (C4K40_5456)	coaE	5829879..5830502 (+)	624	WP_053134599.1	dephospho-CoA kinase	-
C4K40_RS26895 (C4K40_5457)	yacG	5830499..5830702 (+)	204	WP_022641061.1	DNA gyrase inhibitor YacG	-
C4K40_RS26900 (C4K40_5458)	-	5830722..5830937 (-)	216	WP_022641062.1	hypothetical protein	-
C4K40_RS26905 (C4K40_5459)	-	5831001..5831690 (-)	690	WP_022641063.1	energy-coupling factor ABC transporter permease	-
C4K40_RS26910 (C4K40_5460)	-	5831687..5832154 (-)	468	WP_053134602.1	hypothetical protein	-
C4K40_RS26915 (C4K40_5461)	-	5832305..5832934 (+)	630	WP_022641065.1	DUF1780 domain-containing protein	-
C4K40_RS26920 (C4K40_5462)	-	5833124..5833297 (+)	174	WP_022641066.1	DUF3094 family protein	-
C4K40_RS26925 (C4K40_5463)	-	5833358..5834656 (+)	1299	WP_053134605.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31856.07 Da
• Isoelectric Point: 8.0788

>NTDB_id=278923 C4K40_RS26885 WP_053134598.1 5829010..5829882(+) (pilD) [Pseudomonas sp. CMR5c]
MSLTEVLSLYPLAFVLASLVLGLIVGSFLNVLAWRLPRMLERDWRAQAHEILGLPAEPVTAPYNLLLPHSHCPHCARPVR
PWHNVPLLGYLWLGGRCAHCKTRISARYPLVELACGLLSAFVAWHFGFGWTAGLLLLLSWGLLGMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGLLASLEDALWGAVVGYLLLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQVLPLTLLLASLAG
ALIGSLLLRLRQAKGSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=278923 C4K40_RS26885 WP_053134598.1 5829010..5829882(+) (pilD) [Pseudomonas sp. CMR5c]
ATGTCCTTGACTGAAGTCCTGAGCCTTTACCCCCTGGCGTTCGTGCTGGCATCCCTGGTACTGGGGCTGATCGTCGGCAG
CTTCCTCAACGTGCTGGCCTGGCGCCTGCCGCGCATGCTCGAGCGCGATTGGCGCGCCCAGGCCCATGAAATCCTGGGGC
TGCCCGCGGAGCCCGTGACAGCTCCCTACAACCTGTTGCTCCCCCACTCCCACTGCCCGCATTGCGCACGGCCCGTGCGC
CCCTGGCATAACGTCCCCCTGCTCGGCTACCTGTGGCTGGGCGGTCGCTGCGCCCACTGCAAGACCCGGATCAGCGCGCG
CTACCCACTGGTCGAGCTGGCGTGTGGACTGCTTTCGGCATTCGTGGCCTGGCATTTCGGCTTCGGCTGGACGGCCGGCC
TGCTGTTGCTGTTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCACCAATTGCTGCCGGATGTGCTGGTA
CTGCCCCTGTTATGGCTGGGCTTGATCGTCAACAGCTTCGGCCTGCTGGCGAGCCTGGAGGACGCCCTCTGGGGCGCGGT
GGTGGGTTACCTGCTGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACTGGCAAGGACGGCATGGGCCATGGCGATT
TCAAGCTGCTGGCGATGCTAGGGGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCTTGCTGCTGGCCTCCCTGGCCGGC
GCACTGATTGGCAGCCTATTGTTGCGCCTGCGCCAGGCCAAGGGCTCGACTCCGATCCCCTTCGGCCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

3D structure

• AlphaFold DB: A0A7X1U7E3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.877	98.276	0.5
pilD	Vibrio campbellii strain DS40M4	46.809	97.241	0.455
pilD	Acinetobacter nosocomialis M2	47.445	94.483	0.448
pilD	Acinetobacter baumannii D1279779	46.715	94.483	0.441
pilD	Neisseria gonorrhoeae MS11	46.296	93.103	0.431