Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C6I29_RS00580 Genome accession   NZ_CP027365
Coordinates   121251..122381 (-) Length   376 a.a.
NCBI ID   WP_034675550.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 116251..127381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS00550 - 116332..116673 (-) 342 WP_034675564.1 RcnB family protein -
  C6I29_RS00555 - 116868..117410 (-) 543 WP_034675562.1 glutathione peroxidase -
  C6I29_RS00560 - 117537..118196 (-) 660 WP_105919049.1 viral A-type inclusion protein -
  C6I29_RS00565 - 118411..119166 (-) 756 WP_034675554.1 AraC family transcriptional regulator -
  C6I29_RS00570 - 119282..120175 (+) 894 WP_034675552.1 DMT family transporter -
  C6I29_RS00575 - 120637..121206 (-) 570 WP_034675551.1 L-threonylcarbamoyladenylate synthase -
  C6I29_RS00580 dprA 121251..122381 (-) 1131 WP_034675550.1 DNA-processing protein DprA Machinery gene
  C6I29_RS00585 tsaP 122397..123545 (-) 1149 WP_034675548.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  C6I29_RS00590 def 123670..124200 (+) 531 WP_005017251.1 peptide deformylase -
  C6I29_RS00595 - 124299..124715 (+) 417 WP_005405866.1 DUF2946 family protein -
  C6I29_RS00600 - 124781..126844 (+) 2064 WP_005017248.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41895.78 Da        Isoelectric Point: 6.7841

>NTDB_id=276587 C6I29_RS00580 WP_034675550.1 121251..122381(-) (dprA) [Acinetobacter radioresistens strain DSSKY-A-001]
MIAELSQFHYHSLKLWYLVQHSVSSFNQLVEYFGSAEQATTPAALARWGNLKLHANHSKRAQEFYSATGQAEFEQLTQRV
LASCDFILVPEDILYPQQLHPYIDKPPILFGRGSAQALSQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLALG
IDEAAHQGALQHQRTIAVVGTGLDLVYPAHNRKLQEQILQYGGTIVSEFLPGTQPLKHHFPRRNRIVSGLSLGVLVAEAA
LESGSLITAQRAADQGKIIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQLIEDLALPTQWHSQQQKVSSVPEPAQVPEH
LFELYQQLDWVGLHLDQIALKLPLPAAELTGHLMELELLGLCVQQSGRYLRCRPGF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=276587 C6I29_RS00580 WP_034675550.1 121251..122381(-) (dprA) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGATTGCCGAATTATCGCAGTTTCATTATCACAGTCTGAAGCTGTGGTATTTGGTCCAGCATTCAGTTTCAAGTTTTAA
CCAACTGGTTGAGTATTTTGGCAGTGCTGAACAGGCAACCACTCCGGCAGCATTAGCGCGCTGGGGCAATTTAAAACTGC
ATGCCAATCATTCCAAGCGGGCACAGGAATTTTATAGCGCAACCGGTCAGGCTGAGTTTGAGCAACTGACCCAACGGGTA
CTGGCAAGTTGCGATTTTATTTTAGTGCCGGAAGATATACTGTATCCGCAGCAGCTGCACCCTTATATAGATAAGCCTCC
GATCCTGTTTGGCCGAGGTTCTGCTCAAGCCTTAAGTCAACCCCAGATCGCGATTGTAGGCAGTCGCAAACCAAGCCCGC
ATGGCCGGCAAGTAGCCTACGATTTTGCGTATTATCTGAGTGAAAAAGGGTTTTATATTACCAGTGGACTTGCCTTGGGA
ATTGACGAGGCAGCACATCAAGGGGCATTGCAGCATCAGCGTACTATTGCTGTAGTCGGAACCGGACTAGATCTGGTCTA
TCCAGCTCATAACCGTAAGCTTCAAGAACAGATACTTCAATACGGCGGTACAATCGTCAGTGAGTTTTTACCGGGAACCC
AACCACTCAAGCATCATTTTCCACGCCGTAACCGTATTGTTAGTGGTTTGAGTCTAGGTGTACTGGTGGCAGAAGCCGCT
TTAGAAAGTGGTTCATTGATTACTGCACAGCGTGCGGCCGATCAGGGCAAGATTATTTTTGCCATTCCCGGCCATATCTA
CAGCGAGCATCATCAAGGCTGTCATCAACTCATCCGTGAAGGCGCCATACTGGTAGATCATCCGGAACAGCTGATTGAAG
ATCTGGCTTTACCGACCCAGTGGCACAGCCAGCAACAAAAGGTAAGCAGTGTACCCGAGCCGGCACAGGTACCTGAACAT
CTATTTGAACTGTACCAACAACTAGACTGGGTAGGACTGCATCTAGACCAGATTGCTCTTAAATTGCCATTACCTGCGGC
TGAATTGACCGGACATCTGATGGAACTTGAGTTACTTGGACTATGTGTTCAGCAATCTGGGCGCTATCTGCGTTGCCGTC
CGGGCTTTTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(324-367)

DNA recombination-mediator protein A (DNA_processg_A)

(87-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

67.725

100

0.681
  dprA Acinetobacter baumannii D1279779

67.725

100

0.681
  dprA Acinetobacter baylyi ADP1

65.263

100

0.66
  dprA Neisseria meningitidis strain C311

38.287

100

0.404
  dprA Neisseria meningitidis MC58

38.287

100

0.404
  dprA Neisseria gonorrhoeae MS11

36.935

100

0.391
  dprA Neisseria gonorrhoeae strain FA1090

36.683

100

0.388
  dprA Vibrio cholerae strain A1552

43.354

84.043

0.364

Multiple sequence alignment