Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   C6I29_RS00585 Genome accession   NZ_CP027365
Coordinates   122397..123545 (-) Length   382 a.a.
NCBI ID   WP_034675548.1    Uniprot ID   A0A062BSM5
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117397..128545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS00560 - 117537..118196 (-) 660 WP_105919049.1 viral A-type inclusion protein -
  C6I29_RS00565 - 118411..119166 (-) 756 WP_034675554.1 AraC family transcriptional regulator -
  C6I29_RS00570 - 119282..120175 (+) 894 WP_034675552.1 DMT family transporter -
  C6I29_RS00575 - 120637..121206 (-) 570 WP_034675551.1 L-threonylcarbamoyladenylate synthase -
  C6I29_RS00580 dprA 121251..122381 (-) 1131 WP_034675550.1 DNA-processing protein DprA Machinery gene
  C6I29_RS00585 tsaP 122397..123545 (-) 1149 WP_034675548.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  C6I29_RS00590 def 123670..124200 (+) 531 WP_005017251.1 peptide deformylase -
  C6I29_RS00595 - 124299..124715 (+) 417 WP_005405866.1 DUF2946 family protein -
  C6I29_RS00600 - 124781..126844 (+) 2064 WP_005017248.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42079.31 Da        Isoelectric Point: 9.4267

>NTDB_id=276588 C6I29_RS00585 WP_034675548.1 122397..123545(-) (tsaP) [Acinetobacter radioresistens strain DSSKY-A-001]
MKKVFKGSALRALGFKKQFIALAICSSLGIIMPGMAEAASRNINPPSLKASAPNVYVVKRGDTLWDIAGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCTLDGRPLIGKDEGDGCEGIIRRYGGQTSMQPQVRVESLNNAIPVIPLEHIRVWLERT
LIMSPDSVVNTPYILGTADNRVLAAAGQTVYARGNGLQVGQRYAVYREGEPYIFTDANGKSYNAGVELLQVASGVAVQNE
QDITTLELTQSYNGEVRRGDRVMPEYDPMLPTLFYPTIDHQVTEGGQVIRVMGSIGTAARHSVVTVNRGNIHGVQSGQVF
SVYQQGEVVRDPKTREQIKLPSQKVGNIMIFRTFDQLSYAYVLDSALPIKVGSGIQAPPMAE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=276588 C6I29_RS00585 WP_034675548.1 122397..123545(-) (tsaP) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGAAAAAAGTTTTTAAAGGCAGCGCACTTCGTGCCTTGGGGTTTAAAAAGCAGTTTATTGCTCTCGCAATCTGTTCAAG
TTTGGGAATAATCATGCCTGGCATGGCTGAAGCAGCCAGCCGTAATATAAATCCGCCCTCTTTAAAAGCCAGTGCTCCTA
ATGTTTATGTGGTCAAAAGAGGGGATACTTTATGGGATATCGCCGGAAAATTCTTGAGTAAGCCGTGGCGCTGGCCAGAA
ATCTGGGCCAGCAACAAACATGTCAAGAATCCACACTGGATTTATCCGGGCGACCGTTTATTGCTGTGCACTCTAGACGG
ACGACCGCTGATCGGTAAAGATGAAGGTGACGGCTGTGAAGGTATTATTCGCCGTTATGGTGGCCAGACCAGTATGCAGC
CACAAGTTCGTGTTGAATCCCTAAATAATGCTATTCCAGTTATTCCACTTGAACATATTCGGGTCTGGCTGGAACGCACC
CTGATAATGTCACCAGATTCAGTGGTCAATACCCCCTATATTTTAGGCACGGCTGATAACCGGGTATTGGCTGCTGCCGG
TCAAACCGTTTACGCACGCGGTAATGGTCTGCAAGTCGGTCAGCGTTATGCAGTTTATCGTGAGGGTGAGCCTTACATAT
TCACCGATGCTAATGGCAAGTCATATAATGCCGGTGTAGAGCTGCTTCAGGTGGCTTCCGGCGTAGCTGTGCAGAATGAA
CAGGATATTACTACGCTAGAATTAACGCAAAGTTATAATGGGGAAGTCCGTCGCGGGGATCGGGTCATGCCAGAATATGA
TCCTATGTTGCCTACCCTGTTCTATCCAACAATTGACCATCAGGTGACTGAAGGCGGTCAGGTAATTCGGGTGATGGGAT
CAATCGGTACGGCAGCCAGACACAGTGTGGTAACTGTTAACCGGGGCAATATTCATGGTGTTCAGTCCGGTCAGGTATTC
AGTGTCTATCAGCAGGGTGAAGTTGTACGTGATCCGAAAACCCGCGAACAAATCAAACTGCCAAGTCAAAAAGTTGGTAA
TATTATGATTTTCCGTACTTTTGACCAGTTGAGCTATGCTTATGTACTGGACAGCGCCCTACCTATCAAAGTAGGTTCCG
GCATCCAGGCGCCGCCAATGGCAGAGTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BSM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.789

99.476

0.704

Multiple sequence alignment