Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SBAL_RS20245 Genome accession   NC_009052
Coordinates   4615274..4616542 (+) Length   422 a.a.
NCBI ID   WP_011848006.1    Uniprot ID   A3D9H7
Organism   Shewanella baltica OS155     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4610274..4621542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBAL_RS20230 (Sbal_3917) nadC 4611303..4612184 (+) 882 WP_011848003.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SBAL_RS20235 (Sbal_3918) - 4612907..4613338 (+) 432 WP_011848004.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SBAL_RS20240 (Sbal_3919) pilB 4613428..4615140 (+) 1713 WP_011848005.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SBAL_RS20245 (Sbal_3920) pilC 4615274..4616542 (+) 1269 WP_011848006.1 type II secretion system F family protein Machinery gene
  SBAL_RS20250 (Sbal_3921) pilD 4616576..4617490 (+) 915 WP_011848007.1 A24 family peptidase Machinery gene
  SBAL_RS20255 (Sbal_3922) coaE 4617530..4618147 (+) 618 WP_011848008.1 dephospho-CoA kinase -
  SBAL_RS20260 (Sbal_3923) zapD 4618140..4618874 (+) 735 WP_011848009.1 cell division protein ZapD -
  SBAL_RS20265 (Sbal_3924) yacG 4618948..4619157 (+) 210 WP_011848010.1 DNA gyrase inhibitor YacG -
  SBAL_RS20270 (Sbal_3925) mutT 4619234..4619626 (+) 393 WP_011848011.1 8-oxo-dGTP diphosphatase MutT -
  SBAL_RS20275 (Sbal_3926) - 4619857..4620393 (+) 537 WP_006084374.1 thioredoxin family protein -
  SBAL_RS20280 (Sbal_3927) - 4620457..4621383 (-) 927 WP_011848012.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46031.14 Da        Isoelectric Point: 10.2290

>NTDB_id=27604 SBAL_RS20245 WP_011848006.1 4615274..4616542(+) (pilC) [Shewanella baltica OS155]
MATATTTRKSRTKKTEQKSQPKIYTFEWKGLNRDGKKTAGELRGATAAEIRSQLKSQGVNPKSVRKQSSALFKLGDPKIT
PMDIAVITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKSEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIIGGVFLFVRAHRNSQIVRDRVDEAVLKIPAIGSILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKIVS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=27604 SBAL_RS20245 WP_011848006.1 4615274..4616542(+) (pilC) [Shewanella baltica OS155]
ATGGCTACGGCAACGACTACAAGAAAGTCTCGTACCAAGAAAACCGAGCAAAAGAGCCAACCAAAAATTTATACCTTTGA
ATGGAAAGGCCTAAATCGCGACGGTAAGAAAACTGCGGGAGAGCTAAGAGGTGCAACTGCCGCCGAAATCCGTAGTCAGT
TAAAATCCCAAGGAGTGAACCCTAAGAGCGTTCGTAAGCAGTCATCAGCACTATTTAAGTTAGGTGATCCGAAAATCACC
CCTATGGATATTGCTGTAATTACTCGCCAAATTGCGACTATGCTAGCAGCGGGCGTACCTTTAGTAACCACAATTGAACT
ACTCGGCCGCGGTCACGAAAAAGCTAAGGTGCGAGAACTATTAGGAAATATCCTCAGCGAAATTCAATCAGGGATTCCCT
TATCCGATGCAATGCGCCCCCATAGGCGTTACTTCGATGAACTTTATGTCGACCTAGTCGCTGCAGGCGAGCACTCTGGC
TCACTAGATTTGGTTTTTGACCGCGTTGCTACTTACAGAGAAAAATCAGAAGCACTGAAGTCCAAAATTAAGAAGGCCAT
GTTCTATCCTGCTGCAGTTGTCATAGTCGCAATCTTAGTCACATCCTTATTACTATTGTTTGTGGTGCCTCAATTTGAAG
AAATTTTTAAGGGCTTTGGTGCTGAACTGCCCGCCTTTACCCAACTGGTGCTGCATATTTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTAGCCGCCATTATCGGCGGAGTATTTTTGTTTGTACGGGCGCACCGAAACTCACAAATAGTGCGAGA
TAGAGTCGATGAAGCTGTGCTTAAAATCCCCGCTATTGGGTCTATATTACACAAAGGTGCCATGGCACGATTCGCTCGGA
CTTTAGCTACTACCTTCGCCGCGGGCGTGCCGTTAATTGATGGTCTCGAGTCTGCCGCCGGCGCATCGGGTAATGCGGTA
TACCGCAAAGCCATTTTAAAAATCCGTCAAGAAGTGATGGCGGGGATGCAGATGAATGTGGCGATGCAAACCACAGGCCT
GTTCCCCGATATGTTAGTGCAAATGGTGATGATAGGCGAAGAATCAGGCTCACTAGATAACATGCTCAATAAAGTATCAA
CCATCTACGAAATGCAAGTAGATGATGCGGTTGATGGCTTATCAAGCCTGATAGAACCGATTATGATGGTGGTCATAGGT
ACTGTCGTTGGTGGCCTAATTGTTGCTATGTATTTGCCCATCTTCCAAATGGGTAAAATCGTCAGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3D9H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

93.839

0.512
  pilC Legionella pneumophila strain ERS1305867

49.01

95.735

0.469
  pilC Acinetobacter baumannii D1279779

49.246

94.313

0.464
  pilC Acinetobacter baylyi ADP1

48.615

94.076

0.457
  pilC Vibrio cholerae strain A1552

47.462

93.365

0.443
  pilC Vibrio campbellii strain DS40M4

44.307

95.735

0.424
  pilG Neisseria meningitidis 44/76-A

41.687

95.498

0.398
  pilG Neisseria gonorrhoeae MS11

41.687

95.498

0.398

Multiple sequence alignment