Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLMG_RS02090 Genome accession   NC_009004
Coordinates   403253..403642 (+) Length   129 a.a.
NCBI ID   WP_011834458.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris MG1363     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 403253..411572 403253..403642 within 0


Gene organization within MGE regions


Location: 403253..411572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLMG_RS02090 (llmg_0409) ssbB 403253..403642 (+) 390 WP_011834458.1 single-stranded DNA-binding protein Machinery gene
  LLMG_RS02095 (llmg_0410) groES 403761..404045 (+) 285 WP_011834459.1 co-chaperone GroES -
  LLMG_RS02100 (llmg_0411) groL 404132..405760 (+) 1629 WP_011834460.1 chaperonin GroEL -
  LLMG_RS02105 (llmg_0412) - 405810..406622 (-) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  LLMG_RS02115 (llmg_0413) - 406813..408240 (-) 1428 WP_011834461.1 sensor histidine kinase -
  LLMG_RS02120 (llmg_0414) yycF 408233..408934 (-) 702 WP_003131580.1 response regulator YycF -
  LLMG_RS02125 (llmg_0415) tmk 409112..409747 (+) 636 WP_011834462.1 dTMP kinase -
  LLMG_RS02130 (llmg_0416) - 409880..410740 (+) 861 WP_011834463.1 DNA polymerase III subunit delta' -
  LLMG_RS02135 (llmg_0417) ricT 410790..411572 (+) 783 WP_011834464.1 PSP1 domain-containing protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14697.79 Da        Isoelectric Point: 8.3705

>NTDB_id=27452 LLMG_RS02090 WP_011834458.1 403253..403642(+) (ssbB) [Lactococcus cremoris subsp. cremoris MG1363]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHYITEILGLSYDLLESRATLALRESAVKTEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=27452 LLMG_RS02090 WP_011834458.1 403253..403642(+) (ssbB) [Lactococcus cremoris subsp. cremoris MG1363]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTATATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTATATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAAGACTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

99.225

100

0.992
  ssbB Streptococcus sobrinus strain NIDR 6715-7

61.538

100

0.62
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372

Multiple sequence alignment