Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MAQU_RS13725 Genome accession   NC_008740
Coordinates   3003963..3005183 (+) Length   406 a.a.
NCBI ID   WP_011786127.1    Uniprot ID   A1U438
Organism   Marinobacter nauticus VT8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2998963..3010183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAQU_RS13700 (Maqu_2677) - 2999401..2999724 (-) 324 WP_011786122.1 helix-turn-helix domain-containing protein -
  MAQU_RS13705 (Maqu_2678) - 2999711..2999965 (-) 255 WP_049756940.1 type II toxin-antitoxin system RelE/ParE family toxin -
  MAQU_RS13710 (Maqu_2679) - 3000119..3001114 (+) 996 WP_236078926.1 transposase -
  MAQU_RS13715 (Maqu_2680) - 3001341..3001874 (-) 534 WP_328285611.1 pilin -
  MAQU_RS13720 (Maqu_2681) pilB 3002242..3003960 (+) 1719 WP_011786126.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MAQU_RS13725 (Maqu_2682) pilC 3003963..3005183 (+) 1221 WP_011786127.1 type II secretion system F family protein Machinery gene
  MAQU_RS13730 (Maqu_2683) pilD 3005253..3006128 (+) 876 WP_011786128.1 prepilin peptidase Machinery gene
  MAQU_RS13735 (Maqu_2684) coaE 3006129..3006746 (+) 618 WP_011786129.1 dephospho-CoA kinase -
  MAQU_RS13740 (Maqu_2685) - 3006664..3007824 (+) 1161 WP_236078927.1 hypothetical protein -
  MAQU_RS13745 (Maqu_2686) tsaA 3007833..3008582 (+) 750 WP_011786131.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44381.25 Da        Isoelectric Point: 9.5726

>NTDB_id=27160 MAQU_RS13725 WP_011786127.1 3003963..3005183(+) (pilC) [Marinobacter nauticus VT8]
MAEKAQKLEAYVWEGKDRKGNKAKGELAGSNIALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMTIRNDISSGSGFASSLRKHPKYFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
EILKKKVKKAMTYPIAVVVVAIVVTAILLVKVVPQFESLFQGFGADLPVFTQFIIRISEWMQSWWFVVLLGIVGTIFLFK
ESKRRSQKFSDFVDKYVLKLPIVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAVMNIKNDVSSGT
QLQASMRQQGVFPVMAVQLTAIGEESGNLDDMLSKVAEHYEGVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=27160 MAQU_RS13725 WP_011786127.1 3003963..3005183(+) (pilC) [Marinobacter nauticus VT8]
ATGGCAGAAAAAGCGCAGAAGCTCGAAGCATACGTTTGGGAAGGCAAAGACCGCAAAGGTAATAAAGCCAAAGGGGAGCT
GGCGGGCTCCAATATCGCCTTGGTAAAAGCCCAGTTGCGCAAACAGGGCATCATTCCGGATAAGGTTAAGAAAAAGCCAA
AGCCACTGTTTGGCGGCAGCAAGAAGATCACGCCTTTCGACATCGCAATGCTCACCCGCCAGCTGGCAACCATGATGAAA
GCCGGTGTCCCTCTAGTTCAGAGTTTCGATATCGTTGCCGATGGCCTCGAAAATAAAGGCTTGCAGGAACTGGTGATGAC
CATCCGGAACGATATTTCTTCCGGAAGCGGGTTTGCCTCATCTCTGCGCAAACACCCGAAGTATTTTGACGATCTGTATT
GTAACCTCGTGGATTCCGGTGAGAAGGCCGGCGCACTGGAGCAGATGCTTGATCGTATTGCGACTTACCTTGAGAAAACT
GAAATTCTCAAGAAAAAAGTTAAAAAGGCCATGACATACCCCATCGCGGTTGTCGTTGTTGCGATTGTGGTTACGGCCAT
CTTGCTGGTTAAGGTGGTTCCCCAGTTTGAAAGCTTGTTCCAAGGTTTTGGGGCCGATCTGCCAGTATTTACCCAATTTA
TTATCAGGATCTCGGAATGGATGCAGTCCTGGTGGTTTGTGGTTTTGCTCGGCATTGTCGGTACCATCTTCCTGTTCAAG
GAATCAAAGCGGCGATCGCAGAAGTTTTCGGATTTCGTTGATAAATATGTATTGAAGTTGCCCATTGTCGGAGAAATCCT
CGATAAATCCGCAGTAGCCAAATTCGGCCGCGTACTCTCTACCACTTTTGCGGCGGGCGTTCCGCTCGTTGACGCACTCG
ACTCGGTCGCTGGCGCGACGGGCAACGCCGTGTATCGTGATGCTGTCATGAACATCAAGAACGATGTCTCTAGCGGTACC
CAGCTGCAAGCTTCTATGCGGCAACAGGGCGTCTTCCCTGTTATGGCCGTTCAATTGACCGCCATCGGCGAAGAATCAGG
TAATCTGGACGATATGCTGTCAAAGGTGGCTGAGCATTATGAAGGTGTCGTAGACGACATGGTTGATAACCTCACAGCCC
TGATGGAGCCCATGATTATGGCCGTACTCGGCGTTCTGGTTGGTGGCCTGATTATCGGCATGTACCTGCCGATCTTCCAG
ATGGGCCAGGTCGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1U438

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.667

99.754

0.665
  pilC Acinetobacter baumannii D1279779

58.519

99.754

0.584
  pilC Acinetobacter baylyi ADP1

57.635

100

0.576
  pilC Legionella pneumophila strain ERS1305867

53.202

100

0.532
  pilG Neisseria gonorrhoeae MS11

42.857

100

0.429
  pilG Neisseria meningitidis 44/76-A

42.611

100

0.426
  pilC Vibrio cholerae strain A1552

39.163

100

0.392
  pilC Vibrio campbellii strain DS40M4

39.066

100

0.392

Multiple sequence alignment