Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MAQU_RS13730 Genome accession   NC_008740
Coordinates   3005253..3006128 (+) Length   291 a.a.
NCBI ID   WP_011786128.1    Uniprot ID   A1U439
Organism   Marinobacter nauticus VT8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3000253..3011128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAQU_RS13715 (Maqu_2680) - 3001341..3001874 (-) 534 WP_328285611.1 pilin -
  MAQU_RS13720 (Maqu_2681) pilB 3002242..3003960 (+) 1719 WP_011786126.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MAQU_RS13725 (Maqu_2682) pilC 3003963..3005183 (+) 1221 WP_011786127.1 type II secretion system F family protein Machinery gene
  MAQU_RS13730 (Maqu_2683) pilD 3005253..3006128 (+) 876 WP_011786128.1 prepilin peptidase Machinery gene
  MAQU_RS13735 (Maqu_2684) coaE 3006129..3006746 (+) 618 WP_011786129.1 dephospho-CoA kinase -
  MAQU_RS13740 (Maqu_2685) - 3006664..3007824 (+) 1161 WP_236078927.1 hypothetical protein -
  MAQU_RS13745 (Maqu_2686) tsaA 3007833..3008582 (+) 750 WP_011786131.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  MAQU_RS13750 (Maqu_2687) - 3008627..3010981 (+) 2355 WP_011786132.1 response regulator -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32159.31 Da        Isoelectric Point: 7.1253

>NTDB_id=27161 MAQU_RS13730 WP_011786128.1 3005253..3006128(+) (pilD) [Marinobacter nauticus VT8]
MLPLETILSTPWLLYLVVIFVSLCVGSFLNVVILRLPKMMKQEWRCQCEEFLEVPEGDRKSDERITLSKPASTCPSCGHK
IRAWENIPVISWLMLGGKCSSCKTRISPRYPVIEALTAVFSVVTVYLLGPSDSALWALLMVWALVALTVIDFDTQLLPDG
ITLPLMWLGLVLNYFGVLTDFSSAFWGAVAGYLSLWSVYWLFKLATGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSL
VGAIVGISLMAFRKHGREVPIPFGPYLAAAGLLSLWFGPEIQAIWFGYLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=27161 MAQU_RS13730 WP_011786128.1 3005253..3006128(+) (pilD) [Marinobacter nauticus VT8]
ATGCTCCCCCTAGAAACCATCCTGTCCACTCCCTGGCTTCTCTATCTGGTCGTCATTTTCGTCTCTCTCTGCGTCGGTAG
TTTTCTGAACGTTGTCATCCTTCGCCTGCCAAAAATGATGAAGCAGGAATGGCGATGCCAGTGCGAGGAGTTTCTGGAAG
TGCCGGAGGGCGACCGCAAATCAGATGAGCGGATAACTCTTTCAAAACCAGCATCCACCTGCCCCTCCTGCGGCCACAAA
ATTCGTGCCTGGGAAAACATTCCAGTTATCAGTTGGCTGATGCTTGGCGGCAAATGCTCGTCGTGCAAAACCCGCATTTC
GCCACGTTATCCCGTCATTGAAGCCCTGACTGCGGTTTTTTCCGTAGTAACGGTTTACCTGTTGGGTCCATCTGACTCGG
CACTCTGGGCATTGCTGATGGTCTGGGCACTGGTAGCCCTGACAGTGATCGATTTCGACACTCAACTCCTGCCAGACGGC
ATCACCCTGCCCTTAATGTGGCTTGGCCTGGTCCTGAATTACTTTGGTGTGCTGACAGACTTCAGCAGCGCCTTCTGGGG
CGCTGTTGCGGGTTATCTGTCACTCTGGAGTGTGTACTGGTTGTTCAAGCTTGCTACTGGCAAGGAAGGCATGGGGCACG
GGGATTTCAAGCTATTGGCGGCGCTGGGGGCCTGGCTGGGGTGGCAACTGCTGCCTGCCGTGATTCTGCTTTCCTCCCTG
GTGGGCGCCATTGTGGGGATCAGCCTGATGGCATTTCGCAAACACGGGCGTGAAGTGCCTATTCCTTTCGGCCCGTATCT
GGCTGCCGCGGGCTTGCTTTCACTGTGGTTTGGGCCTGAAATCCAGGCCATATGGTTTGGGTACCTCGGAGTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1U439

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

55.474

94.158

0.522
  pilD Acinetobacter nosocomialis M2

54.745

94.158

0.515
  pilD Vibrio campbellii strain DS40M4

52.281

97.938

0.512
  pilD Vibrio cholerae strain A1552

52.5

96.22

0.505
  pilD Neisseria gonorrhoeae MS11

50.201

85.567

0.43

Multiple sequence alignment