Detailed information NTG0027159

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECHS_RS14200
• Genome accession: NC_009800
• Coordinates: 2883978..2884970 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli HS
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2878978..2889970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECHS_RS14180 (EcHS_A2875)	otnK	2879753..2881015 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
ECHS_RS14185 (EcHS_A2876)	ygbL	2881012..2881650 (+)	639	WP_001278994.1	aldolase	-
ECHS_RS14190 (EcHS_A2877)	ygbM	2881655..2882431 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ECHS_RS14195 (EcHS_A2878)	ygbN	2882520..2883884 (+)	1365	WP_000104459.1	GntP family transporter	-
ECHS_RS14200 (EcHS_A2879)	rpoS	2883978..2884970 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECHS_RS14205 (EcHS_A2880)	nlpD	2885033..2886127 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ECHS_RS14210 (EcHS_A2881)	pcm	2886312..2886938 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECHS_RS14215 (EcHS_A2882)	surE	2886932..2887693 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECHS_RS14220 (EcHS_A2883)	truD	2887674..2888723 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
ECHS_RS14225 (EcHS_A2884)	ispF	2888720..2889199 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECHS_RS14230 (EcHS_A2885)	ispD	2889199..2889909 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=27159 ECHS_RS14200 WP_000081550.1 2883978..2884970(-) (rpoS) [Escherichia coli HS]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=27159 ECHS_RS14200 WP_000081550.1 2883978..2884970(-) (rpoS) [Escherichia coli HS]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715