Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C3Y93_RS11340 Genome accession   NZ_CP026616
Coordinates   2358171..2359397 (-) Length   408 a.a.
NCBI ID   WP_004975864.1    Uniprot ID   A0A2A5PJ18
Organism   Acinetobacter sp. SWBY1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2353171..2364397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS11315 (C3Y93_11315) - 2354462..2354785 (+) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -
  C3Y93_RS11320 (C3Y93_11320) rlmB 2354974..2355723 (+) 750 WP_004975856.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C3Y93_RS11325 (C3Y93_11325) - 2355818..2356696 (+) 879 WP_042068576.1 DMT family transporter -
  C3Y93_RS11330 (C3Y93_11330) coaE 2356702..2357301 (-) 600 WP_004975860.1 dephospho-CoA kinase -
  C3Y93_RS14520 (C3Y93_11335) pilD 2357311..2358171 (-) 861 WP_104852954.1 prepilin peptidase Machinery gene
  C3Y93_RS11340 (C3Y93_11340) pilC 2358171..2359397 (-) 1227 WP_004975864.1 type II secretion system F family protein Machinery gene
  C3Y93_RS11345 (C3Y93_11345) pilB 2359428..2361140 (-) 1713 WP_004975865.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C3Y93_RS11350 (C3Y93_11350) tpiA 2361418..2362209 (+) 792 WP_019836081.1 triose-phosphate isomerase -
  C3Y93_RS11355 (C3Y93_11355) secG 2362223..2362552 (+) 330 WP_004975868.1 preprotein translocase subunit SecG -
  C3Y93_RS11380 (C3Y93_11380) rimP 2363504..2364028 (+) 525 WP_004975871.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44996.52 Da        Isoelectric Point: 9.9487

>NTDB_id=270921 C3Y93_RS11340 WP_004975864.1 2358171..2359397(-) (pilC) [Acinetobacter sp. SWBY1]
MAVKKAQMMPTFVYEGIDRKGAKLKGEIPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWMQKYWFILIIVIGVIIA
GFLETKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=270921 C3Y93_RS11340 WP_004975864.1 2358171..2359397(-) (pilC) [Acinetobacter sp. SWBY1]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTCGTTTATGAAGGGATTGACCGCAAAGGGGCTAAGTTAAAAGGGGA
AATTCCAGCGCGTAATATGGCCTTGGCAAAGGTCACATTGCGTAAACAAGGGATTACCATCAAGACGATTCGCCAAAAGA
AAAAGAATATTCTTGAAGGCTTAATGAAAAAACGGGTGTCGACCTTAGACATCACTATTTTCACGCGTCAGCTTGCCACT
ATGATGAAAGCAGGTGTGCCTTTGGTACAAAGCTTTGAGATTGTTGCCGAAGGTCTTGAAAACCCCGCCATGCGTGAAGT
GGTTTTAGGCATTAAAGGTGAAGTGGAAGGCGGGAATACCTTTGCTGGCGCATTGCGTAAATATCCTCAATATTTTGACA
ACCTATTTTGTTCTTTGGTCGAATCTGGTGAACAATCGGGTGCCCTAGAAACCATGCTAGATCGTGTCGCGATCTATAAA
GAAAAGAGTGAGTTACTCAAACAAAAAATTAAAAAAGCCATGAAATACCCTGCAACGGTCATTGTGGTGGCCGTGATTGT
GACCATTATTTTGATGGTGAAAGTCGTACCTGTGTTTGAAGAGTTGTTTAGCTCTTTTGGTGCGGACTTGCCTGCCTTCA
CTAAAATGGTGGTGAACATGTCACAATGGATGCAGAAATACTGGTTTATTCTGATTATTGTGATTGGGGTCATCATTGCA
GGTTTCTTGGAAACTAAAAAACGCAGTAAAAAATTCCGTGACTTCTTAGACAAAGCGGCACTGAAAGCGCCTATTTTTGG
TGACTTGGTCTATAAAGCGATTATTGCACGTTATAGCCGTACTTTAGCCACTACTTTTGCTGCTGGTGTACCCTTAATTG
ATGCCTTGGAATCTACCGCTGGGGCAACCAATAATGTGGTCTATGAAGAAGCCGTGATGAAAATTCGTGATGATGTTGCG
ACAGGTCAACAGCTACAATTCGCCATGCGTGTCACCAATAAATTCCCGTCTATGGCAGTGCAAATGGTCGCCATTGGTGA
AGAATCAGGTGCGCTAGATGCCATGCTAGATAAAGTCGCAACCCACTATGAAAACGAAGTCGACAACGCAGTAGATGGCT
TAACCTCAATGATGGAGCCGTTGATTATGTCTGTCTTGGGTATTTTAGTGGGTGGTTTAGTTGTCGCCATGTACCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PJ18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.99

100

0.88
  pilC Acinetobacter baylyi ADP1

83.578

100

0.836
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.51

0.593
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

42.079

99.02

0.417
  pilC Thermus thermophilus HB27

36.79

99.265

0.365

Multiple sequence alignment