Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C3Y93_RS14520 Genome accession   NZ_CP026616
Coordinates   2357311..2358171 (-) Length   286 a.a.
NCBI ID   WP_104852954.1    Uniprot ID   A0A2L2M0M5
Organism   Acinetobacter sp. SWBY1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2352311..2363171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS11315 (C3Y93_11315) - 2354462..2354785 (+) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -
  C3Y93_RS11320 (C3Y93_11320) rlmB 2354974..2355723 (+) 750 WP_004975856.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C3Y93_RS11325 (C3Y93_11325) - 2355818..2356696 (+) 879 WP_042068576.1 DMT family transporter -
  C3Y93_RS11330 (C3Y93_11330) coaE 2356702..2357301 (-) 600 WP_004975860.1 dephospho-CoA kinase -
  C3Y93_RS14520 (C3Y93_11335) pilD 2357311..2358171 (-) 861 WP_104852954.1 prepilin peptidase Machinery gene
  C3Y93_RS11340 (C3Y93_11340) pilC 2358171..2359397 (-) 1227 WP_004975864.1 type II secretion system F family protein Machinery gene
  C3Y93_RS11345 (C3Y93_11345) pilB 2359428..2361140 (-) 1713 WP_004975865.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C3Y93_RS11350 (C3Y93_11350) tpiA 2361418..2362209 (+) 792 WP_019836081.1 triose-phosphate isomerase -
  C3Y93_RS11355 (C3Y93_11355) secG 2362223..2362552 (+) 330 WP_004975868.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31997.35 Da        Isoelectric Point: 8.0564

>NTDB_id=270926 C3Y93_RS14520 WP_104852954.1 2357311..2358171(-) (pilD) [Acinetobacter sp. SWBY1]
MQELIAYFIQNPTALYIAVGLFSLCIGSFVNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKITLSKPASTCPKCHNP
IRWYQNIPVLSWLVLRGKCGNCQNLISVRYPMIEVLTAVCALIVLAVFGPTVQMLFGLLLTYTLIALTFIDFDTQLLPDR
YTLPLAALGLAVNSYAIYTSPTSAIWGYVIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=270926 C3Y93_RS14520 WP_104852954.1 2357311..2358171(-) (pilD) [Acinetobacter sp. SWBY1]
ATGCAAGAATTAATCGCGTACTTTATCCAAAATCCAACTGCGCTTTATATCGCAGTTGGACTTTTTAGTTTATGTATTGG
CAGTTTTGTGAATGTGGTGATTTACCGCACCCCAAAAATGATGGAACAGGAGTGGCGTAATGACTGCCAAATGTTATTAC
ATCCTGAACAAGCCATTATTGATGAAAGTAAAATCACCCTGAGCAAACCTGCATCGACCTGCCCCAAATGTCACAACCCA
ATTCGTTGGTATCAAAATATTCCTGTGCTGAGTTGGTTGGTATTACGCGGTAAATGTGGCAACTGCCAAAACCTGATCAG
CGTACGTTATCCAATGATTGAAGTATTAACCGCTGTTTGCGCCCTGATTGTGCTTGCGGTATTTGGCCCAACTGTACAAA
TGCTGTTTGGTTTGCTGCTCACTTATACCTTGATTGCACTCACCTTCATTGATTTTGATACACAACTCTTGCCAGACCGT
TACACCCTGCCTTTGGCTGCACTGGGTTTGGCAGTCAACAGCTATGCCATCTATACCTCACCAACCTCGGCAATTTGGGG
TTATGTAATTGGCTTCCTATGTCTATGGGTGGTGTATTACCTGTTTAAAATCGTCACAGGCAAAGAAGGCATGGGCTATG
GTGACTTCAAGCTCCTTGCCGCTTTAGGTGCATGGATGGGGCCGATGATGTTACCCCTGATTGTGCTACTATCGTCCTTA
GTTGGGGCGATTATTGGCATTATTCTGTTAAAAGTGCGTAAAGAAAACCAACCCTTTGCATTTGGTCCGTATATCGCCAT
TGCGGGCTGGATTGCCTTTTTATGGGGCGAGCAAATCATGAAAGTATATTTGGGACAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L2M0M5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80.351

99.65

0.801
  pilD Acinetobacter baumannii D1279779

80

99.65

0.797
  pilD Vibrio cholerae strain A1552

54.478

93.706

0.51
  pilD Vibrio campbellii strain DS40M4

52.416

94.056

0.493
  pilD Neisseria gonorrhoeae MS11

45.788

95.455

0.437

Multiple sequence alignment