Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C2869_RS21030 Genome accession   NZ_CP026604
Coordinates   5489735..5490973 (+) Length   412 a.a.
NCBI ID   WP_108604778.1    Uniprot ID   A0A2S0VWX6
Organism   Saccharobesus litoralis strain CCB-QB4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5484735..5495973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2869_RS21015 (C2869_21015) - 5487361..5487717 (-) 357 WP_108604775.1 Crp/Fnr family transcriptional regulator -
  C2869_RS21020 (C2869_21020) - 5487810..5488379 (-) 570 WP_108604776.1 GNAT family N-acetyltransferase -
  C2869_RS21025 (C2869_21025) - 5488656..5489537 (+) 882 WP_108604777.1 mechanosensitive ion channel family protein -
  C2869_RS21030 (C2869_21030) pilC 5489735..5490973 (+) 1239 WP_108604778.1 type II secretion system F family protein Machinery gene
  C2869_RS21035 (C2869_21035) pilD 5490975..5491865 (+) 891 WP_108604779.1 A24 family peptidase Machinery gene
  C2869_RS21040 (C2869_21040) coaE 5491904..5492500 (+) 597 WP_108604780.1 dephospho-CoA kinase -
  C2869_RS21045 (C2869_21045) zapD 5492647..5493393 (+) 747 WP_108604781.1 cell division protein ZapD -
  C2869_RS21050 (C2869_21050) - 5493434..5493676 (+) 243 WP_108604782.1 DNA gyrase inhibitor YacG -
  C2869_RS21055 (C2869_21055) mutT 5494131..5494526 (-) 396 WP_108604783.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44512.53 Da        Isoelectric Point: 9.9373

>NTDB_id=270619 C2869_RS21030 WP_108604778.1 5489735..5490973(+) (pilC) [Saccharobesus litoralis strain CCB-QB4]
MAKKRKTTPKIDEQAIFTWKGVNRRGDKIAGELAADSITAARSQLRSQGITPSVVKKKPKQFSFGSPSIKSSDIAVISRQ
LATMLSAGVPLVQAVELISKGHDNMAVRKLLSDISIEISSGTPLNEALRKHPKHFDDLYCDLVLAGEQSGALEGIYDRIA
TYKEKAENLKSKIKKAMTYPIAVLAIATIVTIILLIFVVPQFEEIFSGFGAELPAFTQLVIGMSEALQHHGPKLLILLGI
GLFFFLKAYKNSRKLRDSLDGLLLKIPVVGIILNKASLARFARTLATTFAAGVPLIEALDSAAGASGNAVYRKAILSIKN
EISAGMQMNLAMRNTNLFPPMVVQMVQIGEESGSIDSMLNKVANIYEAEVDDMVDGLSALIEPMIMAILGVVIGGLIVAM
YLPIFQMGKIVS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=270619 C2869_RS21030 WP_108604778.1 5489735..5490973(+) (pilC) [Saccharobesus litoralis strain CCB-QB4]
ATGGCCAAAAAAAGAAAAACAACACCCAAAATTGATGAACAGGCCATCTTTACTTGGAAAGGAGTGAACCGGCGAGGCGA
CAAAATTGCGGGTGAATTAGCCGCAGACTCAATTACCGCAGCCCGTTCACAATTGCGTAGTCAAGGTATCACGCCAAGTG
TAGTCAAAAAAAAGCCAAAACAATTCTCTTTTGGTAGCCCGAGTATTAAATCATCAGATATTGCAGTTATTAGTAGGCAG
TTAGCCACTATGCTTAGCGCAGGTGTCCCTCTAGTACAAGCGGTTGAGCTAATCTCCAAAGGCCATGACAATATGGCCGT
TCGTAAGCTATTATCGGATATTAGCATTGAAATTTCCTCAGGTACTCCACTTAATGAAGCTCTGCGCAAACACCCTAAAC
ACTTCGATGATTTATATTGCGATTTAGTACTAGCGGGCGAGCAATCTGGCGCTTTAGAAGGCATTTATGACCGAATTGCC
ACTTACAAGGAAAAAGCAGAAAATCTAAAATCCAAAATCAAAAAAGCGATGACCTATCCTATTGCTGTTCTGGCAATTGC
AACTATCGTCACAATTATACTATTGATCTTCGTTGTCCCTCAGTTTGAAGAAATATTTTCTGGGTTCGGCGCTGAATTAC
CAGCGTTTACTCAATTAGTCATTGGCATGTCCGAAGCATTACAACACCACGGGCCTAAATTATTAATACTGTTAGGAATC
GGACTATTTTTCTTTCTCAAAGCTTATAAAAATTCGCGTAAACTGCGTGATAGCCTAGATGGTTTATTACTAAAAATCCC
CGTGGTCGGTATTATTTTAAATAAGGCCTCTTTAGCGCGCTTCGCTCGTACCTTAGCGACCACCTTTGCCGCTGGGGTCC
CTTTAATTGAAGCACTTGATTCTGCTGCTGGCGCATCTGGCAATGCAGTGTACCGCAAGGCTATCCTCAGTATAAAAAAC
GAAATATCTGCCGGTATGCAAATGAACCTAGCCATGCGCAACACCAATTTATTTCCACCTATGGTGGTACAAATGGTACA
AATTGGTGAGGAATCAGGTTCAATTGATAGTATGTTGAACAAGGTTGCCAATATTTATGAAGCTGAGGTCGATGATATGG
TAGATGGCTTGTCTGCTCTTATTGAACCTATGATCATGGCCATTCTCGGTGTCGTGATTGGTGGCTTAATTGTTGCCATG
TACCTACCAATCTTCCAAATGGGTAAAATTGTTAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(78-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0VWX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.644

96.845

0.558
  pilC Acinetobacter baylyi ADP1

51.942

100

0.519
  pilC Acinetobacter baumannii D1279779

52.645

96.359

0.507
  pilC Legionella pneumophila strain ERS1305867

52.02

96.117

0.5
  pilG Neisseria meningitidis 44/76-A

45

97.087

0.437
  pilG Neisseria gonorrhoeae MS11

44.75

97.087

0.434
  pilC Vibrio cholerae strain A1552

45.663

95.146

0.434
  pilC Vibrio campbellii strain DS40M4

43.687

96.117

0.42
  pilC Thermus thermophilus HB27

38.596

96.845

0.374

Multiple sequence alignment