Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C2869_RS21035 Genome accession   NZ_CP026604
Coordinates   5490975..5491865 (+) Length   296 a.a.
NCBI ID   WP_108604779.1    Uniprot ID   A0A2S0VWY0
Organism   Saccharobesus litoralis strain CCB-QB4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5485975..5496865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2869_RS21015 (C2869_21015) - 5487361..5487717 (-) 357 WP_108604775.1 Crp/Fnr family transcriptional regulator -
  C2869_RS21020 (C2869_21020) - 5487810..5488379 (-) 570 WP_108604776.1 GNAT family N-acetyltransferase -
  C2869_RS21025 (C2869_21025) - 5488656..5489537 (+) 882 WP_108604777.1 mechanosensitive ion channel family protein -
  C2869_RS21030 (C2869_21030) pilC 5489735..5490973 (+) 1239 WP_108604778.1 type II secretion system F family protein Machinery gene
  C2869_RS21035 (C2869_21035) pilD 5490975..5491865 (+) 891 WP_108604779.1 A24 family peptidase Machinery gene
  C2869_RS21040 (C2869_21040) coaE 5491904..5492500 (+) 597 WP_108604780.1 dephospho-CoA kinase -
  C2869_RS21045 (C2869_21045) zapD 5492647..5493393 (+) 747 WP_108604781.1 cell division protein ZapD -
  C2869_RS21050 (C2869_21050) - 5493434..5493676 (+) 243 WP_108604782.1 DNA gyrase inhibitor YacG -
  C2869_RS21055 (C2869_21055) mutT 5494131..5494526 (-) 396 WP_108604783.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 33499.74 Da        Isoelectric Point: 6.9055

>NTDB_id=270620 C2869_RS21035 WP_108604779.1 5490975..5491865(+) (pilD) [Saccharobesus litoralis strain CCB-QB4]
MFENISLMFVQYPAIWVTTALLVCLCIGSFLNVVIHRLPKMLEKEFLCECREYLTDELKKPSNDQQTDQTYNLVKPNSTC
PSCNTAIKPWHNIPIFGWLTLRGKCANCQNPISVRYPLVELLTGVTGAFAAWYFGYGLAAFAAIIFTCLIIAMTFIDLDS
MLLPDQLTLPLLWLGLLVNYQAIFVPLHDAVLGAVLGYLALWSIFWLFKLVTGKEGMGYGDFKLLAALGAWMGYQALLPI
ILISSFVGAVLGIIILKTRKDEEQRIPFGPYLAIAGWIAFYWRDNLIHFYLHNFVY

Nucleotide


Download         Length: 891 bp        

>NTDB_id=270620 C2869_RS21035 WP_108604779.1 5490975..5491865(+) (pilD) [Saccharobesus litoralis strain CCB-QB4]
ATGTTTGAAAATATCTCTTTAATGTTTGTGCAGTACCCTGCCATTTGGGTGACGACAGCACTGCTAGTTTGCTTATGTAT
AGGTAGCTTTTTAAATGTGGTGATCCACCGCCTACCTAAAATGTTGGAAAAAGAGTTTTTATGTGAATGTCGTGAATATC
TCACAGATGAACTAAAAAAACCTTCCAACGACCAACAAACAGACCAAACCTATAACCTAGTTAAACCTAATTCAACGTGT
CCTAGCTGTAATACCGCCATTAAACCTTGGCATAACATTCCCATTTTCGGTTGGTTAACACTGCGAGGTAAGTGTGCCAA
TTGTCAAAATCCAATTTCAGTGCGCTACCCATTAGTAGAGTTGTTAACGGGTGTCACGGGTGCATTTGCGGCTTGGTATT
TTGGTTACGGATTAGCCGCATTTGCCGCCATTATTTTTACTTGTTTAATCATTGCGATGACCTTTATTGATCTGGATAGT
ATGTTGCTACCCGATCAACTAACACTACCATTATTATGGTTGGGTTTATTAGTCAACTATCAGGCTATTTTTGTACCACT
GCATGATGCGGTTTTAGGTGCAGTATTGGGCTATTTAGCCTTGTGGTCTATTTTTTGGTTATTCAAACTGGTAACAGGTA
AAGAAGGCATGGGATATGGTGACTTCAAGCTTTTAGCCGCATTAGGTGCATGGATGGGCTATCAAGCTTTATTGCCGATT
ATTCTTATCTCTTCCTTTGTCGGGGCTGTCTTAGGCATTATCATTTTGAAAACACGTAAAGACGAAGAGCAGCGCATTCC
TTTTGGTCCCTATTTAGCTATAGCCGGTTGGATTGCCTTTTATTGGCGCGACAATTTGATCCACTTTTATTTGCATAACT
TTGTTTATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(23-134)

Type IV leader peptidase family (Peptidase_A24)

(145-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0VWY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.37

98.649

0.507
  pilD Vibrio campbellii strain DS40M4

51.389

97.297

0.5
  pilD Acinetobacter nosocomialis M2

48.966

97.973

0.48
  pilD Acinetobacter baumannii D1279779

48.789

97.635

0.476
  pilD Neisseria gonorrhoeae MS11

48.148

91.216

0.439

Multiple sequence alignment