Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | C3L41_RS01345 | Genome accession | NZ_CP026502 |
| Coordinates | 271130..271519 (+) | Length | 129 a.a. |
| NCBI ID | WP_014024245.1 | Uniprot ID | A0AA43PFR7 |
| Organism | Lactococcus garvieae strain JJJN1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 271130..277971 | 271130..271519 | within | 0 |
Gene organization within MGE regions
Location: 271130..277971
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3L41_RS01345 | ssbB | 271130..271519 (+) | 390 | WP_014024245.1 | single-stranded DNA-binding protein | Machinery gene |
| C3L41_RS01350 | - | 271577..272107 (+) | 531 | WP_014024246.1 | ClbS/DfsB family four-helix bundle protein | - |
| C3L41_RS01355 | groES | 272224..272505 (+) | 282 | WP_003133888.1 | co-chaperone GroES | - |
| C3L41_RS01360 | groL | 272534..274159 (+) | 1626 | WP_003133890.1 | chaperonin GroEL | - |
| C3L41_RS01365 | - | 274211..275022 (-) | 812 | Protein_266 | MBL fold metallo-hydrolase | - |
| C3L41_RS01370 | - | 275019..276437 (-) | 1419 | WP_014024247.1 | ATP-binding protein | - |
| C3L41_RS01375 | yycF | 276430..277131 (-) | 702 | WP_003133894.1 | response regulator YycF | - |
| C3L41_RS01380 | tmk | 277342..277971 (+) | 630 | WP_014570927.1 | dTMP kinase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14730.90 Da Isoelectric Point: 9.3830
>NTDB_id=269935 C3L41_RS01345 WP_014024245.1 271130..271519(+) (ssbB) [Lactococcus garvieae strain JJJN1]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIENSALNLKEDELPF
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIENSALNLKEDELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=269935 C3L41_RS01345 WP_014024245.1 271130..271519(+) (ssbB) [Lactococcus garvieae strain JJJN1]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCGTTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCGTTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
56.589 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.769 |
100 |
0.512 |
| ssbA | Streptococcus mutans UA159 |
50 |
100 |
0.504 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50 |
100 |
0.504 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
42.857 |
86.822 |
0.372 |