Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C3F22_RS00265 Genome accession   NZ_CP026420
Coordinates   51412..53577 (+) Length   721 a.a.
NCBI ID   WP_104425614.1    Uniprot ID   A0A2L0I1H2
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 46412..58577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS00245 (C3F22_00245) pilM 48459..49517 (+) 1059 WP_104425612.1 pilus assembly protein PilM Machinery gene
  C3F22_RS00250 (C3F22_00250) comN 49517..50155 (+) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  C3F22_RS00255 (C3F22_00255) pilO 50152..50868 (+) 717 WP_104425613.1 type 4a pilus biogenesis protein PilO Machinery gene
  C3F22_RS00260 (C3F22_00260) pilP 50868..51395 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  C3F22_RS00265 (C3F22_00265) pilQ 51412..53577 (+) 2166 WP_104425614.1 type IV pilus secretin PilQ Machinery gene
  C3F22_RS00270 (C3F22_00270) aroK 53614..54150 (+) 537 WP_104425615.1 shikimate kinase AroK -
  C3F22_RS00275 (C3F22_00275) aroB 54179..55258 (+) 1080 WP_104425616.1 3-dehydroquinate synthase -
  C3F22_RS00280 (C3F22_00280) - 55271..56122 (+) 852 WP_104425617.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78278.62 Da        Isoelectric Point: 5.0597

>NTDB_id=269214 C3F22_RS00265 WP_104425614.1 51412..53577(+) (pilQ) [Acinetobacter sp. ACNIH1]
MNKSIKEFIFGDANTMNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQFESPSRLI
LDFNEAQQNLKQSSIPVATAEASSVDISSDAQRSRLTVNLANAGAFTTRVEGNTFILKINSSTPVAIAQPVQQQVAQGIT
NIGFQRGAQGEGLVVIDLAGQNTPIDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFSTPVSTVDAVNQNGSGVITIQSAE
SYEYMAFQTDNKLTISLKRPEVKGPLRPKSVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVAELIKAEEEEAKALKQSVALAPIQTEYMQLSYAKAADIEKLITQNKSASGSG
NSSNSTNNDDKESLLSSRGSISIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGIL
SQGITNNNHLLVGGSDTTLWDLREPEVNELGGFTYDIQRPDNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVLTADKQKATVASGSQIPYQSAEGGGVNAVSTTAFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPT
GQLTINKNQINTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDLPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=269214 C3F22_RS00265 WP_104425614.1 51412..53577(+) (pilQ) [Acinetobacter sp. ACNIH1]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGCTAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGC
TGTCGCGATTGCTGTGATGCAAGCAGCGAGTGCGCAAGTTTCAATGACCAATGTGGTACCAATGCAAATTCCTGGACAGG
GAACTGAAATCCGGGTGATGTTTAATGGCTTGCCACCTCAGCCTCAAGCTTATCAGTTTGAATCTCCATCACGCCTGATT
CTGGATTTTAATGAGGCCCAACAAAATCTAAAACAGTCTAGTATTCCAGTCGCAACTGCTGAAGCTAGTTCAGTAGATAT
TAGTTCTGATGCACAACGTTCTCGACTAACGGTGAATCTCGCTAATGCAGGTGCATTTACGACGCGTGTAGAAGGCAATA
CCTTTATTTTAAAAATTAATTCTTCTACTCCAGTCGCTATTGCTCAGCCAGTACAGCAGCAGGTTGCTCAAGGGATTACC
AATATTGGTTTTCAGCGGGGTGCACAAGGTGAAGGGCTGGTGGTAATTGATCTGGCAGGTCAGAACACACCAATCGATGT
TCAGCAGCAAGGAACCAAAGTAATTGTACGGACTTTGGGCTCCAAGATTCCGGCACATTTGACCCGACGTCTAAATGTGA
ATGATTTTTCCACGCCCGTTTCAACCGTAGATGCAGTCAATCAGAATGGCTCAGGTGTGATTACTATTCAATCTGCGGAA
AGCTATGAATATATGGCTTTTCAAACAGACAATAAACTGACCATCAGTTTGAAGCGTCCAGAAGTTAAAGGACCTTTACG
TCCAAAATCAGTTGCTTATACAGGCAAGAAGATTTCTCTAGATTTTCAGGATATTGAAGTTCGTCGAGTTCTACAGTTAT
TAGCCGATTTTACTGATATCAATATGGTTGCTGCAGATAGCGTACAGGGTAATATTACCTTACGCCTCAAGGAAGTACCT
TGGGATCAGGCTTTAGATATCGTGTTAAAAACCAAAAATCTGGATAAACGCCGTAATGGTAATGTGATCTGGATTGCACC
AGTGGCAGAACTAATTAAGGCCGAAGAAGAAGAAGCTAAGGCTTTAAAACAAAGCGTTGCACTTGCACCGATTCAAACTG
AATATATGCAGCTCAGTTATGCAAAAGCAGCAGATATTGAAAAACTGATTACTCAAAATAAAAGTGCATCAGGATCAGGC
AATTCAAGTAATAGTACTAATAACGACGATAAAGAAAGTTTATTAAGTTCACGTGGCTCTATCTCTATTGATGCTCGTAC
CAATACCATTATTGTGAATGATACCCAGCCTTTCATTGATAAAATTCGTAATATGGTTGATCTACTTGATGTGCAAGTGA
AACAGGTGATGGTTGAGGCGCGTATCGTTCGTGCAACGACTGACTTTACCAAAGAAATGGGGGTGAAATGGGGAATCCTA
TCTCAAGGGATTACCAATAATAATCACCTTCTTGTTGGTGGTAGTGATACGACTCTTTGGGATCTCCGAGAGCCAGAAGT
AAATGAGTTAGGTGGATTTACCTATGATATTCAGCGTCCAGATAACCTGAATGTAGACTTAGGGGTTACTAGCCAGGGAG
CAAGTCGCATCGCCTTTGGTTTAATTAGCCTTTCGGATTTTATGCTAGATCTTGAACTTTCTGCGCTTCAAGCAGACGGT
TATGGTGAAGTAATTTCTACGCCAAAAGTGCTCACTGCTGACAAGCAAAAAGCAACCGTTGCTTCTGGTTCACAAATTCC
ATATCAGTCTGCAGAAGGCGGGGGGGTGAATGCTGTTTCAACGACAGCATTTATTGATGCAACTTTAAGTCTGGACGTTA
CACCAAGTATTACGCCAGATGGCAAAGTGCAGATGGAGTTGAATATTACCAGTGACTCACCAGGAAATCCTACACCCACT
GGACAGTTAACTATTAATAAAAATCAGATCAATACTAATGTACTGGTTGATAATGGTGAAACAGTAGTACTCGGTGGTAT
TTTTGAGCAAGAAACTCGAAATGCACAAACTAAAGTTCCTTTCTTGGGTGATCTACCTTATCTAGGTCGTTTATTCCGTA
AAGATGTTAAATCAGATAACAAACGTGAGTTACTGATTTTTGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-347)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

AMIN domain (AMIN)

(55-137)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0I1H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.665

100

0.734
  pilQ Acinetobacter baumannii strain A118

72.527

100

0.732
  comQ Acinetobacter baylyi ADP1

69.553

99.307

0.691
  pilQ Pseudomonas aeruginosa PAK

41.583

96.394

0.401
  pilQ Legionella pneumophila strain Lp02

37.994

98.197

0.373
  pilQ Legionella pneumophila strain ERS1305867

38.034

97.365

0.37

Multiple sequence alignment