Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   C3F22_RS00260 Genome accession   NZ_CP026420
Coordinates   50868..51395 (+) Length   175 a.a.
NCBI ID   WP_034169727.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45868..56395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS00245 (C3F22_00245) pilM 48459..49517 (+) 1059 WP_104425612.1 pilus assembly protein PilM Machinery gene
  C3F22_RS00250 (C3F22_00250) comN 49517..50155 (+) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  C3F22_RS00255 (C3F22_00255) pilO 50152..50868 (+) 717 WP_104425613.1 type 4a pilus biogenesis protein PilO Machinery gene
  C3F22_RS00260 (C3F22_00260) pilP 50868..51395 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  C3F22_RS00265 (C3F22_00265) pilQ 51412..53577 (+) 2166 WP_104425614.1 type IV pilus secretin PilQ Machinery gene
  C3F22_RS00270 (C3F22_00270) aroK 53614..54150 (+) 537 WP_104425615.1 shikimate kinase AroK -
  C3F22_RS00275 (C3F22_00275) aroB 54179..55258 (+) 1080 WP_104425616.1 3-dehydroquinate synthase -
  C3F22_RS00280 (C3F22_00280) - 55271..56122 (+) 852 WP_104425617.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19402.56 Da        Isoelectric Point: 7.1662

>NTDB_id=269213 C3F22_RS00260 WP_034169727.1 50868..51395(+) (pilP) [Acinetobacter sp. ACNIH1]
MNIIKITSALTLGFLLVGCESRIDAVNQEMANIRNQPPLPIEPAPDFIPTEMFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVTRITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=269213 C3F22_RS00260 WP_034169727.1 50868..51395(+) (pilP) [Acinetobacter sp. ACNIH1]
ATGAATATCATTAAAATTACTTCAGCTTTAACACTCGGATTTTTATTGGTGGGCTGCGAATCAAGAATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAATCAACCACCATTACCAATTGAACCGGCGCCGGATTTTATTCCGACAGAAATGTTTA
ATTACGCAGCTCATCAGCTGAAAAGTCCTTTCCTACCAAGCTCTTTAGCAGCTGAATTGAAAATTATGGCGGGTAAGCGG
GTTTATCCGAACTTGTCACGCCAATTACAGCCTTTAGAAAGCTATCCACTCGAAACCTTAAGTATGAAGGGCAGTATGCG
GAATCAGGCGGGGCAGATTCTGGCTCTAATTCAAACGCCTGATGGGGAAATTGAACGGATACAACGTGGCAGCTATATGG
GACTTAATCATGGTCGTGTAACGAGAATTACGCCGACACAGATTGACTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCACGAAGTCTGGTTTTGATTGGGCCAGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.714

100

0.777
  comL Acinetobacter baylyi ADP1

71.598

96.571

0.691

Multiple sequence alignment