Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   C3F22_RS00255 Genome accession   NZ_CP026420
Coordinates   50152..50868 (+) Length   238 a.a.
NCBI ID   WP_104425613.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45152..55868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS00240 (C3F22_00240) ponA 45764..48292 (-) 2529 WP_104425611.1 penicillin-binding protein PBP1a -
  C3F22_RS00245 (C3F22_00245) pilM 48459..49517 (+) 1059 WP_104425612.1 pilus assembly protein PilM Machinery gene
  C3F22_RS00250 (C3F22_00250) comN 49517..50155 (+) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  C3F22_RS00255 (C3F22_00255) pilO 50152..50868 (+) 717 WP_104425613.1 type 4a pilus biogenesis protein PilO Machinery gene
  C3F22_RS00260 (C3F22_00260) pilP 50868..51395 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  C3F22_RS00265 (C3F22_00265) pilQ 51412..53577 (+) 2166 WP_104425614.1 type IV pilus secretin PilQ Machinery gene
  C3F22_RS00270 (C3F22_00270) aroK 53614..54150 (+) 537 WP_104425615.1 shikimate kinase AroK -
  C3F22_RS00275 (C3F22_00275) aroB 54179..55258 (+) 1080 WP_104425616.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27067.66 Da        Isoelectric Point: 4.6843

>NTDB_id=269212 C3F22_RS00255 WP_104425613.1 50152..50868(+) (pilO) [Acinetobacter sp. ACNIH1]
MSNDEFDELSQDVVAVPRKKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIVILVFMLGYFGFIRGKIEAISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNADASSTSATTDTQGAQ

Nucleotide


Download         Length: 717 bp        

>NTDB_id=269212 C3F22_RS00255 WP_104425613.1 50152..50868(+) (pilO) [Acinetobacter sp. ACNIH1]
ATGAGTAATGACGAATTCGATGAATTAAGCCAAGACGTAGTGGCTGTTCCTAGAAAAAAAATGACAGTTGAGAAATTCTT
TCAACAATTCAATACACTAGATCCAAATAATTATGGCAGCTGGCCATTATCAGTCAAGATTACCTGCTGGATCTTTATTG
TTATTCTGGTTTTTATGCTGGGGTATTTCGGATTTATTCGCGGCAAGATAGAAGCAATTTCACAAGCCAGTGCTCAAGAA
CAAAACCTGTTAAATGAATTCCGGGAAAAGGAATCCAAGCTGCGTAATTTACAGCAGTATCAGATTCAGTTGCAGGAGAT
GGAAGCACGTTTTAATCAGCAATTGGAACAATTGCCGAAAGAAACTGAAATTCCTGGCCTGGTTGAAGATATTAACCTGA
GTGGGGTGAACTCTGGACTGAAATTCAAGAATATTCGTCTGGAACCTGAAATCAAGCAGGAATTCTTTATTGAGCAGCCG
ATCGCGATTGAAGCCACTGGGGATTATCACGCCTTTGGTTCTTTTGTAAGTAGTATCGCGGGGCTTTCGCGCATCGTTAC
ACTGCATGACTTCACCATTACAGGAACTGAAAATAAAGAAAAGAAATCTGAAATTCCTGTTATTGATTATGTAGTGAAAG
CGAAAACCTACCGTTATGTAGGCAATGCAGATGCTTCATCTACTTCAGCTACAACTGATACGCAGGGAGCTCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.71

100

0.706
  comO Acinetobacter baylyi ADP1

68.033

100

0.697

Multiple sequence alignment