Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C3F22_RS00030 Genome accession   NZ_CP026420
Coordinates   3489..4718 (-) Length   409 a.a.
NCBI ID   WP_104425601.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..9718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS00010 (C3F22_00010) rlmB 273..1022 (+) 750 WP_104425597.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C3F22_RS00015 (C3F22_00015) - 1066..1983 (+) 918 WP_104425598.1 DMT family transporter -
  C3F22_RS00020 (C3F22_00020) coaE 2022..2627 (-) 606 WP_104425599.1 dephospho-CoA kinase -
  C3F22_RS00025 (C3F22_00025) pilD 2629..3489 (-) 861 WP_104425600.1 prepilin peptidase Machinery gene
  C3F22_RS00030 (C3F22_00030) pilC 3489..4718 (-) 1230 WP_104425601.1 type II secretion system F family protein Machinery gene
  C3F22_RS00035 (C3F22_00035) pilB 4749..6458 (-) 1710 WP_104425602.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C3F22_RS00040 (C3F22_00040) tpiA 6738..7529 (+) 792 WP_104425603.1 triose-phosphate isomerase -
  C3F22_RS00045 (C3F22_00045) secG 7543..7872 (+) 330 WP_004787204.1 preprotein translocase subunit SecG -
  C3F22_RS00075 (C3F22_00075) rimP 8837..9361 (+) 525 WP_034169753.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44844.24 Da        Isoelectric Point: 9.7923

>NTDB_id=269208 C3F22_RS00030 WP_104425601.1 3489..4718(-) (pilC) [Acinetobacter sp. ACNIH1]
MAAVKKGQMTPIFSYEGVDRKGAKIKGELPARNMALAKVNLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDLLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVLKIKEDV
ATGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=269208 C3F22_RS00030 WP_104425601.1 3489..4718(-) (pilC) [Acinetobacter sp. ACNIH1]
ATGGCAGCAGTAAAAAAAGGCCAGATGACACCGATCTTCAGTTATGAAGGGGTTGACCGCAAAGGCGCAAAGATCAAGGG
GGAATTGCCGGCACGAAATATGGCCTTGGCAAAAGTGAACTTGCGCAAACAAGGCATTACGATCAAAACCATTCGAGAAA
AGAAAAAAAATATTCTCGAAGGTTTGATGAAGAAAAAGGTTTCCACCCTGGATATCACCATCTTCACCCGTCAGCTCGCC
ACCATGATGAAAGCGGGGGTGCCTTTAGTACAAGGCTTTGAAATTGTTGCAGAAGGTTTAGAAAATCCATCCATGCGCGA
GGTTGTGCTTGGAATTAAAGGCGAAGTTGAAGGGGGGAATACTTTTGCCGGAGCCTTACGAAAATACCCACAATATTTCG
ATAATCTATTCTGCTCTTTGGTCGAATCTGGCGAACAATCTGGTGCTCTGGAAACCATGCTGGATCGTGTCGCGATTTAT
AAAGAAAAAAGTGAACTGTTGAAGCAAAAGATCAAAAAAGCCATGAAATATCCAGCTACAGTTATTGTAGTAGCTGTGAT
CGTGACGATTATTCTGATGGTGAAAGTAGTCCCTGTATTCCAGGACTTATTCTCTTCATTCGGTGCGGACTTACCTGCAT
TTACTAAAATGGTAGTCAATATGTCCGAATGGATGCAAAAATATTGGTTCCTTTTGATTATTGGAATTGGCGTAGTGATT
ACTGCTTTCCTTGAAGCGAAAAAGCGTAGCAAAAAATTCCGTGATTTACTGGATAAGGCTGCGCTCAAAGCACCCATCTT
TGGTGATCTGGTCTATAAAGCGATCATTGCCCGTTATAGCCGCACTCTCGCCACCACTTTTGCTGCCGGTGTGCCATTAA
TTGATGCGCTTGAATCGACTGCTGGTGCAACCAATAACGTGGTCTATGAGGACGCGGTATTAAAAATCAAGGAAGATGTT
GCAACCGGTCAACAGCTTCAATTTGCCATGCGTGTCACCGATAAATTCCCTTCTATGGCCGTACAAATGGTTGCGATTGG
TGAAGAATCCGGCGCACTAGATGCTATGCTGGATAAAGTCGCAACCCATTATGAAAATGAAGTCGACAATGCGGTCGACG
GTTTAACTTCCATGATGGAGCCCTTGATTATGGCCATTCTTGGTGTCCTTGTTGGTGGCCTTGTTATCGCAATGTACCTT
CCAATTTTCCAAATGGGTTCCGTGGTTTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

83.538

99.511

0.831
  pilC Pseudomonas stutzeri DSM 10701

62.563

97.311

0.609
  pilC Legionella pneumophila strain ERS1305867

53.401

97.066

0.518
  pilG Neisseria gonorrhoeae MS11

46.482

97.311

0.452
  pilG Neisseria meningitidis 44/76-A

46.482

97.311

0.452
  pilC Vibrio cholerae strain A1552

42.402

99.756

0.423
  pilC Vibrio campbellii strain DS40M4

41.709

97.311

0.406

Multiple sequence alignment