Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C3F22_RS00025 Genome accession   NZ_CP026420
Coordinates   2629..3489 (-) Length   286 a.a.
NCBI ID   WP_104425600.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS00010 (C3F22_00010) rlmB 273..1022 (+) 750 WP_104425597.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C3F22_RS00015 (C3F22_00015) - 1066..1983 (+) 918 WP_104425598.1 DMT family transporter -
  C3F22_RS00020 (C3F22_00020) coaE 2022..2627 (-) 606 WP_104425599.1 dephospho-CoA kinase -
  C3F22_RS00025 (C3F22_00025) pilD 2629..3489 (-) 861 WP_104425600.1 prepilin peptidase Machinery gene
  C3F22_RS00030 (C3F22_00030) pilC 3489..4718 (-) 1230 WP_104425601.1 type II secretion system F family protein Machinery gene
  C3F22_RS00035 (C3F22_00035) pilB 4749..6458 (-) 1710 WP_104425602.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C3F22_RS00040 (C3F22_00040) tpiA 6738..7529 (+) 792 WP_104425603.1 triose-phosphate isomerase -
  C3F22_RS00045 (C3F22_00045) secG 7543..7872 (+) 330 WP_004787204.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32156.45 Da        Isoelectric Point: 8.2595

>NTDB_id=269207 C3F22_RS00025 WP_104425600.1 2629..3489(-) (pilD) [Acinetobacter sp. ACNIH1]
MQDFILYFSQNPTALYLAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDESKITLSKPASTCPKCQTP
IRWYRNIPVISWILLRGKCGNCQNPISIRYPFIELLTAVCALIVVATFGPTIQMLFGLVFTYVLITLTFIDFDTQLLPDR
YTLPLAALGLGINSYGIYTTPSSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=269207 C3F22_RS00025 WP_104425600.1 2629..3489(-) (pilD) [Acinetobacter sp. ACNIH1]
ATGCAAGATTTTATTTTATATTTCAGTCAAAACCCAACTGCGCTTTATCTCGCAGTTGGGCTTTTTAGTCTCTGTATTGG
TAGCTTTTTAAACGTTGTCATTTACCGCACCCCTAAAATGATGGAACAGGAATGGCGTACAGATTGCCAGCTGTTCTTGC
ATCCAGATCAGCCCATTATTGATGAAAGCAAAATTACTTTAAGCAAGCCAGCTTCAACCTGCCCGAAATGTCAGACTCCT
ATTCGCTGGTATCGAAATATTCCAGTGATTAGCTGGATCTTATTACGCGGTAAATGTGGCAACTGTCAGAATCCAATCAG
TATTCGCTATCCATTTATCGAACTTCTCACAGCTGTTTGTGCATTAATAGTGGTAGCAACATTCGGGCCTACAATACAGA
TGCTGTTTGGTTTGGTTTTTACCTATGTCTTAATTACCCTCACCTTTATTGATTTCGACACCCAGTTATTACCTGATCGC
TATACCCTGCCGCTGGCTGCACTCGGCCTGGGTATTAATAGTTATGGGATTTATACTACCCCTAGTTCTGCAATCTGGGG
CTATATCATTGGCTTCTTGTGCTTATGGGTAGTGTATTATCTATTTAAGCTGGTGACCGGCAAGGAAGGTATGGGCTATG
GGGATTTCAAACTGTTAGCGGCCCTAGGTGCTTGGATGGGCCCTATGCTTCTACCGTTAATTGTATTATTGTCCTCATTA
GTGGGTGCGATTATTGGGATTATCCTGCTTAAAGTCCGTAAAGAAAACCAGCCCTTTGCCTTTGGTCCTTATATTGCCAT
TGCCGGCTGGATTGCCTTTTTATGGGGTGAGCAGATCATGAAAATTTATTTAGGTCAGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

80.351

99.65

0.801
  pilD Acinetobacter nosocomialis M2

80

99.65

0.797
  pilD Vibrio cholerae strain A1552

55.263

93.007

0.514
  pilD Vibrio campbellii strain DS40M4

52.688

97.552

0.514
  pilD Neisseria gonorrhoeae MS11

47.985

95.455

0.458

Multiple sequence alignment