Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C1N51_RS10145 Genome accession   NZ_CP026315
Coordinates   2085696..2086919 (-) Length   407 a.a.
NCBI ID   WP_050905227.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080696..2091919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS10105 (C1N51_10105) rpsP 2080757..2081005 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  C1N51_RS10110 (C1N51_10110) rimM 2081033..2081581 (+) 549 WP_005534055.1 ribosome maturation factor RimM -
  C1N51_RS10115 (C1N51_10115) trmD 2081609..2082352 (+) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  C1N51_RS10120 (C1N51_10120) rplS 2082394..2082747 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  C1N51_RS10125 (C1N51_10125) yacG 2083114..2083308 (-) 195 WP_005534053.1 DNA gyrase inhibitor YacG -
  C1N51_RS10130 (C1N51_10130) zapD 2083371..2084111 (-) 741 WP_012128881.1 cell division protein ZapD -
  C1N51_RS10135 (C1N51_10135) coaE 2084139..2084753 (-) 615 WP_045451194.1 dephospho-CoA kinase -
  C1N51_RS10140 (C1N51_10140) pilD 2084754..2085623 (-) 870 WP_050910736.1 prepilin peptidase Machinery gene
  C1N51_RS10145 (C1N51_10145) pilC 2085696..2086919 (-) 1224 WP_050905227.1 type II secretion system F family protein Machinery gene
  C1N51_RS10150 (C1N51_10150) pilB 2086954..2088639 (-) 1686 WP_103410543.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C1N51_RS10155 (C1N51_10155) - 2088640..2089125 (-) 486 WP_050905229.1 pilin -
  C1N51_RS10165 (C1N51_10165) nadC 2089391..2090278 (-) 888 WP_103410545.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C1N51_RS10170 (C1N51_10170) ampD 2090371..2090922 (+) 552 WP_103410546.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44980.25 Da        Isoelectric Point: 10.3971

>NTDB_id=268093 C1N51_RS10145 WP_050905227.1 2085696..2086919(-) (pilC) [Vibrio campbellii strain BoB-90]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=268093 C1N51_RS10145 WP_050905227.1 2085696..2086919(-) (pilC) [Vibrio campbellii strain BoB-90]
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCAGGTAAAAAAACCTCTGGAAACGT
GCTCGCAATGACAGAAATCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATTAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAGTCGATTCTAAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCAATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAACGTTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGAGCCTGCTTATTTCCGGC
AAAATTATGTCGCAGCGATCCGATTCATTTCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.754

100

0.998
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.604

99.263

0.393
  pilG Neisseria gonorrhoeae MS11

39.066

100

0.391
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment