Detailed information NTG0268092

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C1N51_RS10140
• Genome accession: NZ_CP026315
• Coordinates: 2084754..2085623 (-)
• Length: 289 a.a.
• NCBI ID: WP_050910736.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain BoB-90
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2079754..2090623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1N51_RS10105 (C1N51_10105)	rpsP	2080757..2081005 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
C1N51_RS10110 (C1N51_10110)	rimM	2081033..2081581 (+)	549	WP_005534055.1	ribosome maturation factor RimM	-
C1N51_RS10115 (C1N51_10115)	trmD	2081609..2082352 (+)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
C1N51_RS10120 (C1N51_10120)	rplS	2082394..2082747 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
C1N51_RS10125 (C1N51_10125)	yacG	2083114..2083308 (-)	195	WP_005534053.1	DNA gyrase inhibitor YacG	-
C1N51_RS10130 (C1N51_10130)	zapD	2083371..2084111 (-)	741	WP_012128881.1	cell division protein ZapD	-
C1N51_RS10135 (C1N51_10135)	coaE	2084139..2084753 (-)	615	WP_045451194.1	dephospho-CoA kinase	-
C1N51_RS10140 (C1N51_10140)	pilD	2084754..2085623 (-)	870	WP_050910736.1	prepilin peptidase	Machinery gene
C1N51_RS10145 (C1N51_10145)	pilC	2085696..2086919 (-)	1224	WP_050905227.1	type II secretion system F family protein	Machinery gene
C1N51_RS10150 (C1N51_10150)	pilB	2086954..2088639 (-)	1686	WP_103410543.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C1N51_RS10155 (C1N51_10155)	-	2088640..2089125 (-)	486	WP_050905229.1	pilin	-
C1N51_RS10165 (C1N51_10165)	nadC	2089391..2090278 (-)	888	WP_103410545.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32633.90 Da
• Isoelectric Point: 7.8754

>NTDB_id=268092 C1N51_RS10140 WP_050910736.1 2084754..2085623(-) (pilD) [Vibrio campbellii strain BoB-90]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEKLTLSVPRSSCQQCGTQIRIR
DNIPVISWLLLRGKCHNCQSPISVRYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=268092 C1N51_RS10140 WP_050910736.1 2084754..2085623(-) (pilD) [Vibrio campbellii strain BoB-90]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATACAAAA
TCGAACCACCAAAAGAAAAACTGACATTAAGCGTACCACGGTCATCTTGTCAGCAATGTGGCACGCAAATTCGTATTCGT
GACAATATCCCAGTGATTAGTTGGCTGCTTCTGCGCGGTAAATGCCACAACTGCCAATCTCCTATCAGCGTACGCTACCC
TCTTATCGAACTGCTTACTGCCTTTTGTTCGGGTTTTATCGCTTTTCACTTCGGTTTTAGCTACTTCACTGTCGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACTATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTACCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
AGGATGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.27	100	0.983
pilD	Vibrio cholerae strain A1552	75.347	99.654	0.751
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.768	93.772	0.495
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436