Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C1S74_RS13960 Genome accession   NZ_CP025794
Coordinates   2806590..2807813 (-) Length   407 a.a.
NCBI ID   WP_045403771.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2801590..2812813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS13920 rpsP 2801682..2801930 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  C1S74_RS13925 rimM 2801957..2802505 (+) 549 WP_045403766.1 ribosome maturation factor RimM -
  C1S74_RS13930 trmD 2802533..2803276 (+) 744 WP_038870473.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  C1S74_RS13935 rplS 2803318..2803671 (+) 354 WP_038870475.1 50S ribosomal protein L19 -
  C1S74_RS13940 yacG 2804006..2804200 (-) 195 WP_038870477.1 DNA gyrase inhibitor YacG -
  C1S74_RS13945 zapD 2804266..2805006 (-) 741 WP_045404061.1 cell division protein ZapD -
  C1S74_RS13950 coaE 2805034..2805648 (-) 615 WP_042603882.1 dephospho-CoA kinase -
  C1S74_RS13955 pilD 2805649..2806518 (-) 870 WP_045403769.1 A24 family peptidase Machinery gene
  C1S74_RS13960 pilC 2806590..2807813 (-) 1224 WP_045403771.1 type II secretion system F family protein Machinery gene
  C1S74_RS13965 pilB 2807845..2809530 (-) 1686 WP_045403773.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C1S74_RS13970 - 2809537..2809980 (-) 444 WP_045403775.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C1S74_RS13975 nadC 2810245..2811132 (-) 888 WP_045403776.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C1S74_RS13980 ampD 2811225..2811776 (+) 552 WP_045403778.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45044.33 Da        Isoelectric Point: 10.4683

>NTDB_id=263853 C1S74_RS13960 WP_045403771.1 2806590..2807813(-) (pilC) [Vibrio hyugaensis strain 090810a]
MKTNAPQLKSFRWKGTNSSGKKTSGQVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKLSHRVKGKDITVFTRQIATML
MTGVPIVQALKLVSENHRKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLPQVFERLATYREK
SEQLKAKVIKALIYPAMVVLVALGVSYLMLTKVIPEFEKMFVGFGADLPAFTQMVLNLSAWTQNWGPFIGLSALSLFISS
RIMAKRSDSFRLLLARSSLRFPILGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMNVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=263853 C1S74_RS13960 WP_045403771.1 2806590..2807813(-) (pilC) [Vibrio hyugaensis strain 090810a]
ATGAAAACTAACGCCCCACAACTTAAAAGTTTCCGCTGGAAAGGCACGAACAGCTCAGGGAAGAAAACCTCCGGACAAGT
GTTAGCCATGACAGAAATTGAAGTGCGAGAACGCCTGGATGCTCAACACATCAAAATTAAGAAGCTTAAGAAAGGCAGTA
TTTCTTTTATCACGAAACTGAGTCATCGAGTCAAAGGCAAAGACATTACGGTATTTACCCGTCAAATCGCTACCATGTTA
ATGACCGGCGTTCCCATCGTTCAAGCTCTGAAGCTTGTCTCAGAAAACCATAGAAAAGCTGAGATGAAGTCAATACTGAT
GAGCGTAACACGAGCAGTAGAAGCAGGTACGCCGATGTCCAAAGCCATGCGAACCGCCAGCACGCATTTTGATCCACTCT
ATACTGATTTAATCGCAACCGGTGAGCAGTCCGGTAACTTACCTCAGGTATTTGAACGTCTAGCGACTTACCGAGAAAAA
AGCGAACAATTGAAAGCAAAAGTCATCAAAGCACTCATCTATCCGGCGATGGTTGTTTTGGTCGCGCTAGGGGTCTCCTA
CCTCATGCTCACCAAAGTGATACCTGAGTTCGAAAAAATGTTTGTTGGCTTTGGCGCCGATCTGCCTGCATTTACTCAAA
TGGTCTTAAATCTTTCGGCATGGACACAAAATTGGGGGCCTTTTATTGGGCTCAGTGCATTAAGCTTGTTTATTTCCTCC
CGTATCATGGCTAAACGTTCGGACTCTTTCCGATTATTGCTGGCCCGATCGAGCTTAAGATTTCCGATACTCGGTCCCGT
CTTATCCAAAGCGGCGATTGCGAAATTCAGCCGTACTCTTGCAACCAGTTTTACCGCCGGTATCCCCATTTTGACAAGCT
TAAAAACCACCTCTAAAACATCCGGTAATATGCATTATCAACTTGCCATCGAAGAGGTCTACCGAGATACCGCAGCGGGT
ATGCCAATGTACATCGCAATGCGCAATTGCAACGTATTCCCAGAATTGGTGCTGCAAATGGTAATGATCGGTGAAGAATC
CGGACGTTTAGACGATATGCTCAACAAAATTGCCGCGATCTATGAGTTTGAAGTGGATAACACCGTCGACAATCTGAGCA
AAATTTTAGAGCCGTTGATCATTGTTTTTCTTGGGGTCGTCGTTGGCGGATTGGTCACAGCAATGTACTTACCAATCTTT
AACTTAATGAACGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

93.612

100

0.936
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.278

100

0.413
  pilC Legionella pneumophila strain ERS1305867

40.695

99.017

0.403
  pilG Neisseria gonorrhoeae MS11

40.049

100

0.4
  pilG Neisseria meningitidis 44/76-A

40.049

100

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.5

98.28

0.398

Multiple sequence alignment