Detailed information NTG0263852

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C1S74_RS13955
• Genome accession: NZ_CP025794
• Coordinates: 2805649..2806518 (-)
• Length: 289 a.a.
• NCBI ID: WP_045403769.1
• Uniprot ID: -
• Organism: Vibrio hyugaensis strain 090810a
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2800649..2811518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1S74_RS13920	rpsP	2801682..2801930 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
C1S74_RS13925	rimM	2801957..2802505 (+)	549	WP_045403766.1	ribosome maturation factor RimM	-
C1S74_RS13930	trmD	2802533..2803276 (+)	744	WP_038870473.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
C1S74_RS13935	rplS	2803318..2803671 (+)	354	WP_038870475.1	50S ribosomal protein L19	-
C1S74_RS13940	yacG	2804006..2804200 (-)	195	WP_038870477.1	DNA gyrase inhibitor YacG	-
C1S74_RS13945	zapD	2804266..2805006 (-)	741	WP_045404061.1	cell division protein ZapD	-
C1S74_RS13950	coaE	2805034..2805648 (-)	615	WP_042603882.1	dephospho-CoA kinase	-
C1S74_RS13955	pilD	2805649..2806518 (-)	870	WP_045403769.1	A24 family peptidase	Machinery gene
C1S74_RS13960	pilC	2806590..2807813 (-)	1224	WP_045403771.1	type II secretion system F family protein	Machinery gene
C1S74_RS13965	pilB	2807845..2809530 (-)	1686	WP_045403773.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C1S74_RS13970	-	2809537..2809980 (-)	444	WP_045403775.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C1S74_RS13975	nadC	2810245..2811132 (-)	888	WP_045403776.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32427.59 Da
• Isoelectric Point: 7.9246

>NTDB_id=263852 C1S74_RS13955 WP_045403769.1 2805649..2806518(-) (pilD) [Vibrio hyugaensis strain 090810a]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEAPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCKSSISARYPLIELLTAFGSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALSGISPVNLQDAIIGAMAGYLCLWSVYWVFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=263852 C1S74_RS13955 WP_045403769.1 2805649..2806518(-) (pilD) [Vibrio hyugaensis strain 090810a]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACAATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAAA
TTGAAGCACCGAAGGAAACACTGACCTTAAGTGTCCCTCGTTCTTCCTGCCAACAGTGCGGAACGCCGATCCGCATTCGT
GACAACATTCCTGTCATTAGCTGGCTGCTTCTGAAAGGCAAATGCCATAACTGTAAATCCTCGATTAGTGCTCGCTACCC
TCTCATCGAATTGCTTACTGCTTTTGGTTCGGGTTTTATCGCGTTTCACTTCGGTTTTAGTTACTTCACTGTTGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACTATGTTGCTACCAGACCAACTAACACTGCCA
TTAATGTGGGCAGGTATTGCACTTGCATTGTCTGGCATTAGTCCTGTTAACCTACAAGACGCCATCATTGGCGCGATGGC
TGGTTACTTGTGTCTTTGGAGTGTTTACTGGGTATTCAAGCTTCTGACGGGCAAAGAGGGCATGGGCTATGGTGACTTCA
AACTGCTTGCTGCCCTTGGTGCATGGTTAGGCTGGCAATCACTGCCGATGATCATTTTACTGTCGTCGGTTGTGGGCGTT
ATTTTCGGCCTGATACAACTGCGTTTACAAAAACAGGGTATCGAAAAAGCGTTCCCCTTTGGCCCTTACCTTGCGATTGC
AGGTTGGGTGAGCCTTATTTGGGGTAACCAGATTCTAAACTGGTACTTCACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	95.156	100	0.952
pilD	Vibrio cholerae strain A1552	74.653	99.654	0.744
pilD	Acinetobacter baumannii D1279779	51.439	96.194	0.495
pilD	Acinetobacter nosocomialis M2	51.079	96.194	0.491
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443