Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV445_RS03790 Genome accession   NZ_CP031255
Coordinates   763661..765694 (+) Length   677 a.a.
NCBI ID   WP_114921707.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 758661..770694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS03775 - 758953..760398 (+) 1446 WP_114921704.1 restriction endonuclease subunit S -
  DV445_RS03780 - 760417..761913 (+) 1497 WP_114921705.1 HsdM family class I SAM-dependent methyltransferase -
  DV445_RS03785 purD 762208..763476 (+) 1269 WP_114921706.1 phosphoribosylamine--glycine ligase -
  DV445_RS03790 uvrB 763661..765694 (+) 2034 WP_114921707.1 excinuclease ABC subunit UvrB Machinery gene
  DV445_RS03795 - 765721..766752 (+) 1032 WP_114921708.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  DV445_RS03800 copM 767241..767636 (+) 396 WP_114921709.1 CopM family metallochaperone -
  DV445_RS03805 - 767942..769333 (-) 1392 WP_114921710.1 3'-5' exonuclease -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 77107.67 Da        Isoelectric Point: 5.0063

>NTDB_id=263786 DV445_RS03790 WP_114921707.1 763661..765694(+) (uvrB) [Neisseria elongata strain M15910]
MEVIQYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
HQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVVTQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRLKGKGKNKVKVGEIHNEEDAIKEIA
KLEKAMQQAARDLQFEEAAVLRDRIRNIKESLLFGAE

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=263786 DV445_RS03790 WP_114921707.1 763661..765694(+) (uvrB) [Neisseria elongata strain M15910]
ATGGAAGTCATCCAATACCCCGATTCCCCCTTCAAACTCCACCAGCCCTTCCCGCCCGCCGGCGACCAGCCCACCGCCAT
TGCCGGCCTGCTCGAAGGGCTTTCAGACGGCCTGGCCTATCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACA
CCATGGCGAACGTCATCGCCCAAAGCGGCCGTCCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTCTAT
GCCGAAATGCGCGAGTTTTTCCCTGAAAACGCAGTGGAATATTTCGTCTCCTACTACGACTATTACCAGCCCGAAGCCTA
TGTGCCCAGCCGCGATTTGTTTATCGAAAAAGACAGCGCGATCAACGAACACATCGAGCAGATGCGCCTTTCCGCCACCA
AAAACCTGATGACGCGCGACGACGTGATTATCGTCGCCACCGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAGTAT
CAACAAATGGTGTTGTCCGTCAAAGAAGGCGACACCATCGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAACGCGGTGATTTGGATTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCTGCCGAAAGCT
CCGAAAACGCCTTACGCATCAGCTTGTTTGACGACGAAATCGACCGCCTCGATATGTTCGACCCACTTTCAGGCAGCCTG
CACCAGCGCGTCGGCCGCTACACCGTTTTCCCGTCCAGCCACTACGTTACCCCGCGCGACACCGTATTGCGCGCCTGCGA
ATCCATCAAAGAAGAACTGCGCGAACGCATCGAATTTTTTGCCCGCGAACAACGCCCCGTCGAACAACAACGCATCGAAC
AACGCACCCGTTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAACTACTCCCGCCATTTCTCC
GGCAAAAAAGAAGGCGAACCGCCACCCACACTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTTACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTGGACTACGGCTTCCGCC
TGCCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCC
ACCCCCGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGACTGGTTGACCCCCA
AATCATCATCCGCCCCGTCGTCACCCAAGTTGATGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TACTCGTTACCACCCTCACCAAACGCATGGCGGAACAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAC
CTGCATAGTGACATCGACACCGTAGAGCGCGTTGAAATTATTAGGGATTTGCGGCTCGGACTGTTTGACGTACTCGTCGG
CATCAACCTATTGCGCGAAGGCCTCGACATTCCCGAAGTCTCCCTCGTCGCCATACTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCCCACCGCAGCCTGATTCAAACCATAGGCCGCGCTGCGCGCAACGTGAACGGCGTCGCCATCCTGTACGCCGAC
AAAATCACCGACTCCATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGCGAAAAACAGATGAAATTCAACGAAGAACA
CGGCATCGTGCCACAGCAGATTAAAAAACAGGTCAAAGACATCATCGACGGCGTGTACCACGAAGAAGACGGCGGCAAAG
GTCGTCTGAAAGGTAAAGGTAAGAACAAAGTTAAAGTCGGCGAGATTCACAACGAAGAAGACGCGATTAAAGAAATCGCC
AAACTGGAAAAAGCCATGCAGCAAGCGGCTAGGGATTTGCAGTTTGAAGAGGCTGCGGTGTTAAGGGATAGGATTCGGAA
TATTAAAGAGAGTTTGTTGTTTGGGGCGGAGTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(23-144)

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

UvrB interaction domain (UvrB_inter)

(165-255)

UvrB/uvrC motif (UVR)

(637-670)

Ultra-violet resistance protein B (UvrB)

(557-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.489

98.227

0.545
  uvrB Streptococcus pneumoniae R6

55.489

98.227

0.545
  uvrB Streptococcus pneumoniae D39

55.489

98.227

0.545

Multiple sequence alignment