Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C1S73_RS10835 Genome accession   NZ_CP025792
Coordinates   2289514..2290623 (+) Length   369 a.a.
NCBI ID   WP_038870149.1    Uniprot ID   A0A2A2N4S4
Organism   Vibrio jasicida 090810c     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2284514..2295623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS10815 rsmB 2285432..2286715 (-) 1284 WP_038870157.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  C1S73_RS10820 fmt 2286798..2287745 (-) 948 WP_038870155.1 methionyl-tRNA formyltransferase -
  C1S73_RS10825 def 2287779..2288297 (-) 519 WP_038870153.1 peptide deformylase -
  C1S73_RS10830 - 2288436..2289530 (+) 1095 WP_038870150.1 LysM peptidoglycan-binding domain-containing protein -
  C1S73_RS10835 dprA 2289514..2290623 (+) 1110 WP_038870149.1 DNA-processing protein DprA Machinery gene
  C1S73_RS10840 - 2290626..2291105 (+) 480 WP_038870148.1 DUF494 family protein -
  C1S73_RS10845 - 2291129..2291698 (+) 570 WP_038870147.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  C1S73_RS10850 - 2291764..2292897 (-) 1134 WP_038870146.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  C1S73_RS10855 purE 2292902..2293387 (-) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  C1S73_RS10860 - 2293588..2294145 (+) 558 WP_038870144.1 L-threonylcarbamoyladenylate synthase -
  C1S73_RS10865 hemF 2294180..2295097 (+) 918 WP_095760630.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39739.51 Da        Isoelectric Point: 6.1716

>NTDB_id=263786 C1S73_RS10835 WP_038870149.1 2289514..2290623(+) (dprA) [Vibrio jasicida 090810c]
MQPHNDTDLAAWLKLSCLPGIGGVKMNKLLTKDTPNNIVQYSTEQLLRLGLAMKQLQAWSEVDKEVDACLTWLESSSHHS
ILTLANPLYPPLLKQTVAPPPLLFVKGDASCLSQPQIAMVGSRNASVDGLQHARSFASELVQHDLIVTSGLALGIDGHAH
DGALMAGGKTIAVLGSGLEQVYPARHRGLAQRVMENGTLVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASIHSPNASGGNQLIRNGACLVQTTQDVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=263786 C1S73_RS10835 WP_038870149.1 2289514..2290623(+) (dprA) [Vibrio jasicida 090810c]
ATGCAACCACACAATGATACCGACCTCGCTGCCTGGTTAAAGCTCAGCTGCTTACCAGGCATTGGCGGGGTTAAGATGAA
TAAGCTGCTGACCAAAGACACGCCGAATAACATTGTCCAATACTCGACTGAACAGCTTCTCCGCCTTGGGCTGGCGATGA
AACAGTTACAAGCATGGTCTGAGGTCGATAAAGAAGTCGATGCTTGTTTAACTTGGTTAGAATCCTCTTCCCATCATTCT
ATTCTCACCTTGGCGAATCCACTTTATCCTCCACTTCTTAAACAAACGGTCGCGCCACCTCCTTTATTATTTGTAAAGGG
AGATGCGAGCTGTTTGTCTCAACCGCAAATCGCCATGGTTGGTAGTCGTAATGCTAGTGTGGATGGGTTGCAACATGCTC
GTAGCTTTGCTTCAGAACTCGTACAACATGATCTGATAGTGACCAGTGGCTTGGCTTTGGGTATTGATGGTCATGCTCAT
GATGGTGCGCTTATGGCGGGCGGTAAAACTATCGCTGTCTTAGGTTCTGGGCTGGAGCAAGTGTACCCCGCCAGGCATCG
TGGTTTAGCGCAGCGTGTCATGGAGAATGGCACTCTAGTTTCGGAGTTTCGTCCAAACGCGAAACCTCGTGCGGAAAACT
TCCCACGTCGCAATCGAATTATTAGTGGTTTGTCGTTGGGTGTATTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCCTTG
ATTACTGCTCGTTATGCTCTGGAACAAGGTCGTGAAGTATTTGCGCTTCCTGCCTCTATTCATTCGCCCAATGCGAGTGG
CGGTAATCAATTGATTCGTAACGGTGCTTGTCTCGTACAAACTACTCAAGACGTGTTAAATGAAATACAGTCACTGCTTG
ATTGGTCTATTAATCAGAGCCTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2N4S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

91.599

100

0.916
  dprA Vibrio cholerae strain A1552

58.378

100

0.585
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.48
  dprA Legionella pneumophila strain ERS1305867

47.734

89.702

0.428
  dprA Haemophilus influenzae Rd KW20

45

92.141

0.415
  dprA Neisseria meningitidis strain C311

36.41

100

0.385
  dprA Neisseria meningitidis MC58

36.41

100

0.385
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.374
  dprA Acinetobacter baylyi ADP1

40.597

90.786

0.369

Multiple sequence alignment