Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NEUT_RS05300 Genome accession   NC_008344
Coordinates   1081099..1082319 (+) Length   406 a.a.
NCBI ID   WP_011634122.1    Uniprot ID   Q0AH83
Organism   Nitrosomonas eutropha C91     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1076099..1087319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEUT_RS05280 (Neut_1039) - 1076855..1077871 (+) 1017 WP_242500218.1 uroporphyrinogen-III C-methyltransferase -
  NEUT_RS05285 (Neut_1040) - 1077868..1079049 (+) 1182 WP_011634119.1 heme biosynthesis protein HemY -
  NEUT_RS05290 (Neut_1041) - 1079056..1080102 (-) 1047 WP_011634120.1 CDP-6-deoxy-delta-3,4-glucoseen reductase -
  NEUT_RS05295 (Neut_1042) - 1080134..1081039 (+) 906 WP_011634121.1 SDR family oxidoreductase -
  NEUT_RS05300 (Neut_1043) pilC 1081099..1082319 (+) 1221 WP_011634122.1 type II secretion system F family protein Machinery gene
  NEUT_RS05305 (Neut_1044) pilD 1082363..1083223 (+) 861 WP_011634123.1 A24 family peptidase Machinery gene
  NEUT_RS05310 (Neut_1045) coaE 1083227..1083838 (+) 612 WP_011634124.1 dephospho-CoA kinase -
  NEUT_RS05315 (Neut_1046) zapD 1083911..1084666 (+) 756 WP_011634125.1 cell division protein ZapD -
  NEUT_RS13915 (Neut_1047) - 1084683..1084877 (+) 195 WP_011634126.1 DNA gyrase inhibitor YacG -
  NEUT_RS05320 (Neut_1048) argA 1084945..1086279 (-) 1335 WP_011634127.1 amino-acid N-acetyltransferase -
  NEUT_RS05325 (Neut_1049) - 1086303..1087064 (-) 762 WP_011634128.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44055.00 Da        Isoelectric Point: 9.7463

>NTDB_id=26317 NEUT_RS05300 WP_011634122.1 1081099..1082319(+) (pilC) [Nitrosomonas eutropha C91]
MVTIATSEKKVKEFNFIWEGKDKTGRAIKGEMRAAGTVVVTSTLRKQGIRVTKITKARAGGKITDKDITLFTRQLATMMK
SGVPLLQAFDIVGKGHSNRAVGKLLMDIKSEVETGSSLANAFKKHPLYFDSLFCNLVAAGEAAGILDNLLDRLATYKEKI
QAIKGKIKSALFYPVSIIVVAFIITAVIMIFVIPAFKELFQGFGADLPAPTLMVMTISDFFVAYWWAIFGGIGGGLYVFF
YAWKRSAAMQHVMDRLALRLPIFGEVIRKATIARWSRTLSTMFAAGVPLVEALNSVAGAAGNQVYYEATKNIQNEVSTGS
SLVDAMMATNVFPSMVLQMVSIGEESGSLDAMLSKIADFFEAEVDDAVEALSSLMEPLIMVVLGTLIGGMVVAMYLPIFK
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=26317 NEUT_RS05300 WP_011634122.1 1081099..1082319(+) (pilC) [Nitrosomonas eutropha C91]
ATGGTAACGATCGCGACATCAGAAAAGAAAGTCAAAGAATTCAATTTTATATGGGAAGGAAAAGATAAAACCGGAAGGGC
GATTAAAGGCGAAATGCGTGCGGCTGGCACTGTTGTAGTGACTTCTACACTACGCAAACAGGGTATCAGAGTAACAAAAA
TCACCAAGGCCAGGGCGGGTGGAAAAATTACCGATAAGGATATTACGTTGTTTACACGCCAGCTTGCAACGATGATGAAA
TCGGGAGTGCCTTTGTTGCAAGCCTTTGATATTGTAGGCAAGGGACACAGTAATCGTGCAGTCGGGAAACTACTGATGGA
TATCAAATCAGAAGTGGAAACAGGTAGCAGTCTGGCTAATGCATTCAAAAAACATCCACTTTATTTTGACTCCCTGTTTT
GTAACCTGGTGGCAGCGGGGGAAGCTGCCGGTATCCTGGATAACCTGCTTGACAGGTTGGCTACCTATAAGGAAAAGATT
CAGGCGATCAAGGGGAAAATAAAATCGGCATTGTTTTATCCTGTTTCAATCATTGTGGTTGCTTTCATCATTACCGCAGT
AATCATGATATTCGTAATCCCGGCTTTCAAGGAGCTTTTCCAGGGATTTGGTGCTGATCTACCCGCCCCAACCCTGATGG
TCATGACTATTTCTGACTTTTTTGTAGCATACTGGTGGGCAATTTTTGGAGGAATCGGTGGGGGGCTTTATGTATTTTTT
TATGCCTGGAAGCGTTCTGCCGCAATGCAGCATGTCATGGATCGATTGGCTCTGAGGTTACCAATTTTTGGAGAGGTGAT
CCGTAAAGCTACGATCGCCCGTTGGTCGCGGACACTTTCAACTATGTTTGCTGCCGGTGTTCCTTTGGTTGAGGCACTTA
ATTCTGTTGCCGGCGCAGCCGGAAACCAAGTGTATTATGAGGCAACAAAAAATATCCAGAACGAAGTCAGTACCGGCAGC
AGTCTGGTGGATGCGATGATGGCAACCAATGTTTTTCCTTCAATGGTGCTGCAGATGGTTTCCATAGGCGAGGAATCAGG
TTCGCTTGATGCAATGCTCAGCAAAATTGCAGATTTCTTTGAGGCAGAAGTGGATGATGCGGTGGAGGCACTTTCCAGTC
TGATGGAGCCGCTCATCATGGTGGTGCTAGGGACGCTCATTGGCGGAATGGTGGTCGCCATGTATCTGCCTATTTTTAAA
ATGGGGCAGGTGGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0AH83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.025

98.03

0.539
  pilG Neisseria gonorrhoeae MS11

53.652

97.783

0.525
  pilG Neisseria meningitidis 44/76-A

53.401

97.783

0.522
  pilC Pseudomonas stutzeri DSM 10701

51.98

99.507

0.517
  pilC Acinetobacter baumannii D1279779

51.759

98.03

0.507
  pilC Acinetobacter baylyi ADP1

51.134

97.783

0.5
  pilC Vibrio cholerae strain A1552

40.648

98.768

0.401
  pilC Vibrio campbellii strain DS40M4

39.552

99.015

0.392
  pilC Thermus thermophilus HB27

35.749

100

0.365

Multiple sequence alignment