Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SSA_RS08995 Genome accession   NC_009009
Coordinates   1830366..1831031 (-) Length   221 a.a.
NCBI ID   WP_011837399.1    Uniprot ID   A3CPW2
Organism   Streptococcus sanguinis SK36     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825366..1836031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS08990 (SSA_1834) hpf 1829742..1830284 (-) 543 WP_002903257.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SSA_RS08995 (SSA_1835) comFC/cflB 1830366..1831031 (-) 666 WP_011837399.1 ComF family protein Machinery gene
  SSA_RS09000 (SSA_1836) comFA/cflA 1831028..1832326 (-) 1299 WP_011837400.1 DEAD/DEAH box helicase Machinery gene
  SSA_RS09005 (SSA_1837) - 1832383..1833015 (+) 633 WP_011837401.1 YigZ family protein -
  SSA_RS09010 (SSA_1839) cysK 1833116..1834045 (+) 930 WP_002893488.1 cysteine synthase A -
  SSA_RS09015 (SSA_1840) - 1834150..1834512 (-) 363 WP_002901252.1 S1 RNA-binding domain-containing protein -
  SSA_RS09020 (SSA_1841) - 1834512..1835912 (-) 1401 WP_011837402.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25486.33 Da        Isoelectric Point: 7.9624

>NTDB_id=26318 SSA_RS08995 WP_011837399.1 1830366..1831031(-) (comFC/cflB) [Streptococcus sanguinis SK36]
MTECLLCKGQIEEKGSFLQLFLLKGEEPSCCSTCYQNFECISEERCPRCFRNRQSDLCTDCQKWEGEGNQVQHQSLFTYN
EAMKNYFSQYKFQGDYALRFVFAKATKKAVKMFREHTIVPIPVSIEKFQARGFNQVQGILDAGNLSYRNILEKKDTLAQS
SKTREERLLTQQAFEIRKGVDLPEKILLVDDIYTTGKTLQLAKQILLEAGVKEILTFSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=26318 SSA_RS08995 WP_011837399.1 1830366..1831031(-) (comFC/cflB) [Streptococcus sanguinis SK36]
ATGACAGAGTGTCTTTTATGCAAGGGGCAAATTGAGGAGAAAGGCAGTTTTTTACAGCTTTTTCTATTAAAAGGAGAAGA
ACCAAGCTGCTGCTCCACTTGTTATCAAAATTTTGAATGCATATCTGAAGAGCGTTGCCCACGCTGTTTTCGCAACAGGC
AATCAGATTTATGTACAGATTGCCAAAAATGGGAGGGAGAGGGGAATCAAGTTCAGCATCAGTCACTATTTACCTATAAT
GAAGCAATGAAGAATTATTTCAGTCAATACAAGTTTCAGGGAGACTATGCATTGCGTTTTGTATTTGCAAAAGCAACTAA
AAAAGCAGTCAAAATGTTTAGAGAGCATACCATTGTTCCGATTCCAGTCAGTATCGAAAAATTTCAAGCGAGAGGTTTTA
ATCAAGTGCAGGGGATTTTAGATGCTGGAAACTTGTCATATAGAAATATATTAGAGAAAAAAGACACTTTAGCACAGTCG
AGCAAGACACGTGAGGAGCGTCTGCTGACGCAGCAAGCTTTTGAAATTAGGAAAGGAGTTGATTTGCCAGAAAAAATTTT
GCTGGTTGATGATATCTATACGACTGGAAAAACCTTGCAATTGGCTAAGCAAATCTTGCTGGAAGCAGGAGTGAAAGAAA
TTTTGACATTTTCAATCGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CPW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

46.575

99.095

0.462
  comFC/cflB Streptococcus pneumoniae Rx1

46.575

99.095

0.462
  comFC/cflB Streptococcus pneumoniae D39

46.575

99.095

0.462
  comFC/cflB Streptococcus pneumoniae R6

46.575

99.095

0.462
  comFC/cflB Streptococcus mitis NCTC 12261

46.119

99.095

0.457
  comFC/cflB Streptococcus mitis SK321

45.662

99.095

0.452

Multiple sequence alignment