Detailed information NTG0026318

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NEUT_RS05305
• Genome accession: NC_008344
• Coordinates: 1082363..1083223 (+)
• Length: 286 a.a.
• NCBI ID: WP_011634123.1
• Uniprot ID: Q0AH82
• Organism: Nitrosomonas eutropha C91
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1077363..1088223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NEUT_RS05285 (Neut_1040)	-	1077868..1079049 (+)	1182	WP_011634119.1	heme biosynthesis protein HemY	-
NEUT_RS05290 (Neut_1041)	-	1079056..1080102 (-)	1047	WP_011634120.1	CDP-6-deoxy-delta-3,4-glucoseen reductase	-
NEUT_RS05295 (Neut_1042)	-	1080134..1081039 (+)	906	WP_011634121.1	SDR family oxidoreductase	-
NEUT_RS05300 (Neut_1043)	pilC	1081099..1082319 (+)	1221	WP_011634122.1	type II secretion system F family protein	Machinery gene
NEUT_RS05305 (Neut_1044)	pilD	1082363..1083223 (+)	861	WP_011634123.1	A24 family peptidase	Machinery gene
NEUT_RS05310 (Neut_1045)	coaE	1083227..1083838 (+)	612	WP_011634124.1	dephospho-CoA kinase	-
NEUT_RS05315 (Neut_1046)	zapD	1083911..1084666 (+)	756	WP_011634125.1	cell division protein ZapD	-
NEUT_RS13915 (Neut_1047)	-	1084683..1084877 (+)	195	WP_011634126.1	DNA gyrase inhibitor YacG	-
NEUT_RS05320 (Neut_1048)	argA	1084945..1086279 (-)	1335	WP_011634127.1	amino-acid N-acetyltransferase	-
NEUT_RS05325 (Neut_1049)	-	1086303..1087064 (-)	762	WP_011634128.1	16S rRNA (uracil(1498)-N(3))-methyltransferase	-
NEUT_RS05330 (Neut_1050)	-	1087162..1087719 (+)	558	WP_011634129.1	thioredoxin family protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31138.08 Da
• Isoelectric Point: 8.0360

>NTDB_id=26318 NEUT_RS05305 WP_011634123.1 1082363..1083223(+) (pilD) [Nitrosomonas eutropha C91]
MNIFNTLQASPAFFISFISLIGLILGSFLNVVIYRLPVMLKREWMQQCAELRGEQVKVLPAYNLAIPGSGCSQCGHKISV
LENIPIISYLLLRGHCSSCQARIPFDYPLVEALTAILSGFAAWHFGFSGILLAALIFIWAMIILTFIDLNTQLLPDSITQ
PLLWAGLIVNLHNGFVDIHSAVIGAVAGYLTLWSVYWLFKLITGKEGMGYGDFKLLAAVGAWLGWQLLPLVILLSSVMGA
AIGTILILAANRSKGTTLPFGPYLAGGGLIALFWGSQINQAYLAMF

Nucleotide

• Length: 861 bp

>NTDB_id=26318 NEUT_RS05305 WP_011634123.1 1082363..1083223(+) (pilD) [Nitrosomonas eutropha C91]
ATGAATATTTTTAATACCCTGCAAGCTTCACCAGCTTTTTTTATTTCATTTATCTCGCTTATTGGCCTGATTCTGGGAAG
TTTCCTGAATGTAGTGATTTACAGGTTGCCCGTGATGTTAAAACGTGAATGGATGCAACAATGTGCTGAGTTGCGTGGGG
AGCAGGTAAAAGTACTGCCGGCGTATAACCTGGCTATACCAGGCTCCGGTTGTTCACAGTGTGGTCATAAAATTTCCGTC
CTCGAAAATATTCCGATTATCAGCTACCTTCTTTTGCGCGGACACTGTTCAAGTTGCCAGGCTCGTATTCCATTTGATTA
TCCACTGGTTGAGGCTCTGACAGCTATTCTAAGCGGTTTTGCTGCGTGGCATTTTGGTTTTAGTGGGATTTTACTTGCTG
CGCTGATTTTTATTTGGGCAATGATTATTTTGACATTTATTGATCTGAATACCCAGCTTTTACCAGATAGTATTACACAG
CCGCTGTTATGGGCAGGCCTGATCGTGAATCTGCATAATGGTTTTGTAGATATCCATTCAGCTGTTATCGGTGCGGTTGC
AGGTTACCTGACACTCTGGAGTGTGTACTGGCTGTTCAAACTGATTACCGGTAAGGAAGGCATGGGGTATGGTGATTTCA
AGTTGCTGGCTGCAGTCGGTGCCTGGTTGGGTTGGCAATTACTGCCACTGGTAATCTTGCTTTCTTCTGTGATGGGGGCT
GCTATTGGTACCATCCTGATCCTGGCCGCTAATCGTTCAAAAGGTACAACACTTCCCTTTGGTCCTTATCTGGCAGGAGG
AGGATTAATTGCTTTGTTCTGGGGCAGTCAGATCAATCAGGCATACCTGGCCATGTTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

3D structure

• AlphaFold DB: Q0AH82

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.169	99.301	0.528
pilD	Vibrio cholerae strain A1552	51.799	97.203	0.504
pilD	Acinetobacter baumannii D1279779	46.595	97.552	0.455
pilD	Acinetobacter nosocomialis M2	46.595	97.552	0.455
pilD	Neisseria gonorrhoeae MS11	49.049	91.958	0.451