Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C0058_RS27880 Genome accession   NZ_CP025624
Coordinates   5939732..5940940 (+) Length   402 a.a.
NCBI ID   WP_003215923.1    Uniprot ID   -
Organism   Pseudomonas sp. NC02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5934732..5945940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0058_RS27855 (C0058_27860) nadC 5936084..5936932 (+) 849 WP_008437288.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C0058_RS27860 (C0058_27865) - 5937067..5937372 (-) 306 WP_008437299.1 DUF6388 family protein -
  C0058_RS27870 (C0058_27875) - 5937621..5939030 (-) 1410 WP_102369921.1 O-antigen ligase -
  C0058_RS27875 (C0058_27880) - 5939117..5939530 (-) 414 WP_087694624.1 pilin -
  C0058_RS27880 (C0058_27885) pilC 5939732..5940940 (+) 1209 WP_003215923.1 type II secretion system F family protein Machinery gene
  C0058_RS27885 (C0058_27890) pilD 5940937..5941815 (+) 879 WP_371316153.1 A24 family peptidase Machinery gene
  C0058_RS27890 (C0058_27895) coaE 5941812..5942435 (+) 624 WP_008437307.1 dephospho-CoA kinase -
  C0058_RS27895 (C0058_27900) yacG 5942432..5942632 (+) 201 WP_003215918.1 DNA gyrase inhibitor YacG -
  C0058_RS27900 (C0058_27905) - 5942629..5942844 (-) 216 WP_003215917.1 hypothetical protein -
  C0058_RS27905 (C0058_27910) - 5942910..5943599 (-) 690 WP_087694626.1 energy-coupling factor ABC transporter permease -
  C0058_RS27910 (C0058_27915) - 5943596..5944063 (-) 468 WP_087694627.1 FAD/FMN-containing dehydrogenase -
  C0058_RS27915 (C0058_27920) - 5944166..5944795 (+) 630 WP_008437312.1 DUF1780 domain-containing protein -
  C0058_RS27920 (C0058_27925) - 5944885..5945058 (+) 174 WP_010174986.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43056.40 Da        Isoelectric Point: 9.7183

>NTDB_id=263143 C0058_RS27880 WP_003215923.1 5939732..5940940(+) (pilC) [Pseudomonas sp. NC02]
MNDVSAIYAWEGVNRKGRKVSGETRGHNPALIKALLRQQGINPGRVRKKFAGWPSLALPVKPAEIALFTRQLATLLKAGI
ALLQALDIIAEGFDNRHMGALVQGLKQEIAAGSSLAVALQKYPRYFDDLYCNLVAAGEQAGALEALLERVAIHLEKSEQL
KARIKKAMTYPVTVLAVATAVSAILLIHVVPQFQGLFAGVDAQLPGFTLGVISLSEFMQQSWWMLILAAGAGFAGMRKAY
RSSTGFRHWLDASLLKAPVAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGATGNGQFKQAINRMRHDVATGIQLN
ESMAISGLFPGMAIQMTAIGEESGTLDNMLEKVACHYEADVDNLVDNLTSLMEPLIMVVLGGIVGALVLAMYLPIFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=263143 C0058_RS27880 WP_003215923.1 5939732..5940940(+) (pilC) [Pseudomonas sp. NC02]
ATGAATGATGTTTCAGCGATCTATGCCTGGGAAGGCGTCAACCGCAAAGGGCGCAAGGTCTCCGGAGAAACCCGCGGTCA
CAATCCCGCCCTGATCAAGGCACTGCTGCGCCAGCAAGGTATCAATCCTGGGCGCGTACGCAAGAAATTCGCCGGTTGGC
CGAGCCTCGCCCTGCCGGTCAAACCGGCAGAGATCGCCCTCTTCACCCGCCAATTGGCGACGCTGCTGAAGGCTGGTATC
GCACTTTTACAGGCGCTGGATATCATCGCCGAGGGCTTCGACAACCGGCATATGGGGGCGCTGGTACAAGGCTTGAAGCA
GGAGATCGCCGCCGGCAGCAGCCTGGCTGTCGCCTTGCAGAAATACCCACGCTACTTCGATGATCTGTACTGCAACCTGG
TTGCGGCGGGCGAACAGGCGGGCGCACTCGAAGCGCTGCTGGAAAGGGTGGCCATTCACCTGGAAAAAAGCGAACAGCTG
AAAGCCAGAATCAAGAAGGCCATGACCTATCCCGTGACGGTACTGGCAGTCGCCACCGCTGTCAGCGCAATCCTGCTGAT
TCACGTGGTGCCGCAGTTTCAGGGGTTGTTTGCCGGCGTCGATGCACAACTGCCGGGCTTTACCCTGGGCGTCATCAGCC
TGTCGGAGTTCATGCAGCAAAGCTGGTGGATGCTGATCCTGGCCGCGGGTGCCGGTTTCGCAGGAATGCGCAAAGCCTAT
CGCTCGTCCACAGGCTTTCGCCACTGGCTCGATGCCAGTTTGTTGAAAGCTCCCGTGGCAGGCACACTGCTGAAAAAATC
GGCGGTCGCCCGCTATGCTCGCACGCTCTCGACCACCTTCGCGGCGGGCGTTCCATTGGTGCAGGCATTGGATTCCGTGG
CCGGCGCCACGGGTAACGGGCAGTTCAAACAGGCAATCAATCGTATGCGGCACGACGTTGCAACCGGAATCCAGCTGAAT
GAATCCATGGCCATAAGCGGCCTGTTTCCAGGCATGGCGATCCAGATGACGGCTATCGGCGAGGAGTCGGGCACCCTCGA
TAACATGCTGGAAAAAGTCGCCTGCCACTACGAGGCTGACGTCGATAACCTGGTGGACAACCTTACCAGCCTCATGGAGC
CGCTGATCATGGTGGTACTCGGCGGCATCGTCGGGGCATTGGTGCTGGCCATGTACCTGCCGATCTTTCAACTCGGTACA
GCCTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.804

99.005

0.602
  pilC Acinetobacter baylyi ADP1

54.115

99.751

0.54
  pilC Acinetobacter baumannii D1279779

53.671

98.259

0.527
  pilC Legionella pneumophila strain ERS1305867

48.608

98.259

0.478
  pilG Neisseria gonorrhoeae MS11

40.609

98.01

0.398
  pilG Neisseria meningitidis 44/76-A

39.848

98.01

0.391
  pilC Vibrio cholerae strain A1552

39.796

97.512

0.388
  pilC Vibrio campbellii strain DS40M4

38.636

98.507

0.381
  pilC Thermus thermophilus HB27

36.842

99.254

0.366

Multiple sequence alignment