Detailed information NTG0263144

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C0058_RS27885
• Genome accession: NZ_CP025624
• Coordinates: 5940937..5941815 (+)
• Length: 292 a.a.
• NCBI ID: WP_371316153.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NC02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5935937..5946815

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C0058_RS27855 (C0058_27860)	nadC	5936084..5936932 (+)	849	WP_008437288.1	carboxylating nicotinate-nucleotide diphosphorylase	-
C0058_RS27860 (C0058_27865)	-	5937067..5937372 (-)	306	WP_008437299.1	DUF6388 family protein	-
C0058_RS27870 (C0058_27875)	-	5937621..5939030 (-)	1410	WP_102369921.1	O-antigen ligase	-
C0058_RS27875 (C0058_27880)	-	5939117..5939530 (-)	414	WP_087694624.1	pilin	-
C0058_RS27880 (C0058_27885)	pilC	5939732..5940940 (+)	1209	WP_003215923.1	type II secretion system F family protein	Machinery gene
C0058_RS27885 (C0058_27890)	pilD	5940937..5941815 (+)	879	WP_371316153.1	A24 family peptidase	Machinery gene
C0058_RS27890 (C0058_27895)	coaE	5941812..5942435 (+)	624	WP_008437307.1	dephospho-CoA kinase	-
C0058_RS27895 (C0058_27900)	yacG	5942432..5942632 (+)	201	WP_003215918.1	DNA gyrase inhibitor YacG	-
C0058_RS27900 (C0058_27905)	-	5942629..5942844 (-)	216	WP_003215917.1	hypothetical protein	-
C0058_RS27905 (C0058_27910)	-	5942910..5943599 (-)	690	WP_087694626.1	energy-coupling factor ABC transporter permease	-
C0058_RS27910 (C0058_27915)	-	5943596..5944063 (-)	468	WP_087694627.1	FAD/FMN-containing dehydrogenase	-
C0058_RS27915 (C0058_27920)	-	5944166..5944795 (+)	630	WP_008437312.1	DUF1780 domain-containing protein	-
C0058_RS27920 (C0058_27925)	-	5944885..5945058 (+)	174	WP_010174986.1	DUF3094 family protein	-
C0058_RS27925 (C0058_27930)	-	5945119..5946417 (+)	1299	WP_003215906.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32104.28 Da
• Isoelectric Point: 8.0030

>NTDB_id=263144 C0058_RS27885 WP_371316153.1 5940937..5941815(+) (pilD) [Pseudomonas sp. NC02]
MSTPLTEILVYQPWVFVSGALLLGLIVGSFINVLVWRLPKMLEREWRAQAHEVLGLPAEPVAAPYNLMHPNSCCPRCNHP
IRPWENIPLLSYVLLKGRCSSCHQPIGARYPITELACGLISAVVAWHFGFGWAAGAVLLLSWGLLAMSLIDADHQLLPDV
LVLPLLWLGLILNSFGVFVSLHDALWGAVAGYMSLWSVFWVFKLITGKDGMGHGDFKLLAMLGAWGGWQILPMTLLLSSL
VGVMGGLILLRLRKAHASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 879 bp

>NTDB_id=263144 C0058_RS27885 WP_371316153.1 5940937..5941815(+) (pilD) [Pseudomonas sp. NC02]
TTGAGCACGCCACTGACTGAGATCCTCGTTTATCAGCCGTGGGTGTTTGTGTCAGGCGCGTTGCTGCTGGGCTTGATTGT
CGGCAGTTTTATCAACGTGCTGGTATGGCGCCTGCCGAAGATGCTGGAACGTGAATGGCGAGCCCAGGCCCATGAAGTAC
TGGGCCTTCCCGCCGAGCCTGTCGCCGCGCCCTATAACCTGATGCACCCAAACTCCTGCTGCCCGCGTTGCAACCACCCG
ATTCGCCCCTGGGAGAATATTCCGCTGCTCAGTTATGTACTGCTCAAGGGACGTTGCTCAAGTTGCCATCAACCTATTGG
CGCGCGTTATCCCATCACCGAACTGGCGTGCGGGCTGATCTCGGCGGTTGTCGCCTGGCATTTCGGTTTTGGCTGGGCAG
CCGGGGCGGTGTTGTTGTTGAGTTGGGGCTTGCTGGCGATGAGCCTGATCGATGCAGACCACCAACTGCTGCCGGATGTG
CTGGTGCTGCCGTTGCTGTGGCTGGGCCTGATCCTCAACAGCTTTGGCGTTTTTGTGTCATTGCACGATGCGCTGTGGGG
CGCGGTAGCCGGTTACATGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAACTGATTACCGGCAAGGATGGGATGGGGCACG
GGGATTTCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGATGACGCTGTTGCTGTCTTCCCTG
GTGGGTGTGATGGGAGGCCTGATTCTATTGCGCCTGCGCAAAGCCCACGCATCCACTCCAATGCCTTTTGGTCCGTATCT
GGCAATTGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.93	97.26	0.534
pilD	Vibrio campbellii strain DS40M4	51.579	97.603	0.503
pilD	Acinetobacter nosocomialis M2	47.94	91.438	0.438
pilD	Acinetobacter baumannii D1279779	47.94	91.438	0.438
pilD	Neisseria gonorrhoeae MS11	47.407	92.466	0.438