Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C0119_RS01505 Genome accession   NZ_CP025618
Coordinates   318687..319916 (-) Length   409 a.a.
NCBI ID   WP_004810078.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain SGAir0122     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313687..324916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS01480 (C0119_05935) - 315053..315376 (+) 324 WP_004810087.1 pyrimidine/purine nucleoside phosphorylase -
  C0119_RS01485 (C0119_05930) rlmB 315529..316278 (+) 750 WP_004810085.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C0119_RS01490 (C0119_05925) - 316285..317208 (+) 924 WP_034424053.1 DMT family transporter -
  C0119_RS01495 (C0119_05920) coaE 317229..317825 (-) 597 WP_004810082.1 dephospho-CoA kinase -
  C0119_RS16130 (C0119_05915) pilD 317827..318687 (-) 861 WP_004810080.1 prepilin peptidase Machinery gene
  C0119_RS01505 (C0119_05910) pilC 318687..319916 (-) 1230 WP_004810078.1 type II secretion system F family protein Machinery gene
  C0119_RS01510 (C0119_05905) pilB 319948..321657 (-) 1710 WP_108675603.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C0119_RS01515 (C0119_05900) tpiA 321940..322731 (+) 792 WP_004810075.1 triose-phosphate isomerase -
  C0119_RS01520 (C0119_05895) secG 322745..323074 (+) 330 WP_004810073.1 preprotein translocase subunit SecG -
  C0119_RS01550 (C0119_05865) rimP 324135..324659 (+) 525 WP_004810072.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44984.45 Da        Isoelectric Point: 9.9331

>NTDB_id=263039 C0119_RS01505 WP_004810078.1 318687..319916(-) (pilC) [Acinetobacter schindleri strain SGAir0122]
MASVKKGQMMPTFTYEGVDRKGIKIKGEIPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=263039 C0119_RS01505 WP_004810078.1 318687..319916(-) (pilC) [Acinetobacter schindleri strain SGAir0122]
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTCACCTATGAAGGGGTAGACCGTAAAGGTATAAAGATTAAAGG
GGAAATACCTGCACGTAACCTCGCCTTGGCCAAGGTCACGTTGCGTAAGCAGGGTATCAGTATCAAGAGTATTCGAGAAA
AAAAGAAGAATATTCTTGAAGGCCTGATGAAGAAAAAAGTGACCACACTGGATATCACCATTTTTACCCGTCAGCTTGCT
ACCATGATGAAAGCCGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCGGAAGGCCTTGAAAATCCTTCAATGCGCGA
GGTTGTACTCGGGATTAAAGGTGAGGTTGAGGGCGGAAATACCTTTGCAGGTGCACTGCGCAAGTATCCTCAATACTTTG
ATAAGCTATTCTGTTCGCTGGTTGAATCCGGTGAACAATCGGGTGCTTTAGAGACTATGCTGGATCGTGTTGCGATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAGAAAATTAAAAAAGCCATGAAATACCCAGCAACAGTGGTTGTTGTTGCGATTAT
TGTTACGATTATTTTGATGGTTAAAGTCGTTCCAGTCTTCCAGGATCTCTTCTCGTCATTTGGTGCAGACTTGCCAGCAT
TTACAAAAATGGTAGTCAATATGTCTGAATGGATGCAGAAATACTGGTTCCTGCTGATCATTGGGATTGGTGTAGTCATT
ACTGCTTTCCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGTGATTTCTTGGATAAGGCTGCACTAAAAGCACCTATCTT
TGGTGATCTGGTTTATAAAGCGATTATTGCTCGTTATAGTCGTACTCTGGCAACGACTTTTGCTGCTGGTGTTCCATTAA
TTGATGCACTGGAATCAACTGCAGGCGCTACAAATAATGTAGTTTATGAAGATGCTGTCATGAAAATTCGTGAGGATGTT
GCTACTGGCCAACAACTGCAATTCGCCATGCGTGTTACCAATAAGTTTCCTTCTATGGCCGTGCAAATGGTCTCGATTGG
TGAAGAATCTGGTGCACTAGATGCCATGCTGGATAAAGTCGCGACCCATTATGAAAATGAAGTCGACAATGCCGTTGATG
GTTTGACCTCCATGATGGAACCATTAATTATGGCCGTTCTTGGTGTGCTTGTAGGTGGTCTTGTTATTGCAATGTACCTG
CCAATTTTCCAGATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

82.555

99.511

0.822
  pilC Pseudomonas stutzeri DSM 10701

62.217

97.066

0.604
  pilC Legionella pneumophila strain ERS1305867

54.02

97.311

0.526
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilG Neisseria meningitidis 44/76-A

46.985

97.311

0.457
  pilC Vibrio cholerae strain A1552

42.647

99.756

0.425
  pilC Vibrio campbellii strain DS40M4

41.235

99.022

0.408

Multiple sequence alignment