Detailed information NTG0263071

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C0119_RS16130
• Genome accession: NZ_CP025618
• Coordinates: 317827..318687 (-)
• Length: 286 a.a.
• NCBI ID: WP_004810080.1
• Uniprot ID: -
• Organism: Acinetobacter schindleri strain SGAir0122
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 312827..323687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C0119_RS01475 (C0119_05940)	recN	312974..314635 (-)	1662	WP_108675604.1	DNA repair protein RecN	-
C0119_RS01480 (C0119_05935)	-	315053..315376 (+)	324	WP_004810087.1	pyrimidine/purine nucleoside phosphorylase	-
C0119_RS01485 (C0119_05930)	rlmB	315529..316278 (+)	750	WP_004810085.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
C0119_RS01490 (C0119_05925)	-	316285..317208 (+)	924	WP_034424053.1	DMT family transporter	-
C0119_RS01495 (C0119_05920)	coaE	317229..317825 (-)	597	WP_004810082.1	dephospho-CoA kinase	-
C0119_RS16130 (C0119_05915)	pilD	317827..318687 (-)	861	WP_004810080.1	prepilin peptidase	Machinery gene
C0119_RS01505 (C0119_05910)	pilC	318687..319916 (-)	1230	WP_004810078.1	type II secretion system F family protein	Machinery gene
C0119_RS01510 (C0119_05905)	pilB	319948..321657 (-)	1710	WP_108675603.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C0119_RS01515 (C0119_05900)	tpiA	321940..322731 (+)	792	WP_004810075.1	triose-phosphate isomerase	-
C0119_RS01520 (C0119_05895)	secG	322745..323074 (+)	330	WP_004810073.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32007.26 Da
• Isoelectric Point: 8.2629

>NTDB_id=263071 C0119_RS16130 WP_004810080.1 317827..318687(-) (pilD) [Acinetobacter schindleri strain SGAir0122]
MQDLILYFTQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQLFLHPDQPIIDESKLTLSKPASTCPKCHTR
IRWYQNIPVISWLALRGKCANCQNPISARYPFIEILTAVCALTVLAVLGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYAIYTSPTSAIWGYIIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLVVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=263071 C0119_RS16130 WP_004810080.1 317827..318687(-) (pilD) [Acinetobacter schindleri strain SGAir0122]
ATGCAAGATCTTATTTTATATTTCACTCAAAACCCGACTGCGCTCTATATTGCAGTCGGGCTTTTTAGTCTCTGTATCGG
TAGTTTCCTGAATGTCGTAATTTACCGCACCCCTAAAATGATGGAACAGGAATGGCGTAACGACTGCCAGCTGTTTTTAC
ACCCTGATCAACCGATCATTGATGAAAGCAAGCTCACATTAAGTAAACCTGCGTCGACCTGTCCAAAATGTCATACACGG
ATTCGCTGGTATCAAAATATTCCTGTGATCAGCTGGCTGGCTCTTCGCGGCAAATGTGCGAACTGTCAAAATCCAATTAG
TGCCCGTTATCCATTCATTGAAATTCTAACAGCAGTTTGTGCATTGACCGTTTTGGCTGTATTGGGTCCTACCATACAAA
TGTTGTTCGGTCTGGTGCTGACTTATATTCTCATTGCACTAACCTTTATTGACTTTGATACCCAGCTGCTTCCAGATCGC
TATACCCTTCCGCTTGCAGCTTTAGGCTTAGGGGTAAATAGCTATGCAATTTACACCTCACCAACTTCAGCCATCTGGGG
TTATATCATCGGCTTCCTGTGTTTATGGGTCGTGTACTACCTGTTCAAAATAGTAACTGGTAAAGAAGGCATGGGTTATG
GTGACTTTAAATTGCTGGCTGCTTTAGGTGCCTGGATGGGACCGTTAATGTTGCCACTAGTTGTATTATTGTCATCACTC
GTTGGTGCAATTATTGGCATTATTCTGTTAAAAGTACGTAAGGAAAATCAGCCTTTTGCTTTTGGTCCTTATATTGCCAT
TGCCGGCTGGATCGCTTTCCTGTGGGGCGAGCAGATTATGAAAGTCTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80.351	99.65	0.801
pilD	Acinetobacter baumannii D1279779	80	99.65	0.797
pilD	Vibrio campbellii strain DS40M4	51.773	98.601	0.51
pilD	Vibrio cholerae strain A1552	53.759	93.007	0.5
pilD	Neisseria gonorrhoeae MS11	46.886	95.455	0.448