Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DV119_RS05660 Genome accession   NZ_CP031245
Coordinates   1025407..1026138 (+) Length   243 a.a.
NCBI ID   WP_050221198.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M16808     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1020407..1031138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS05635 dnaK 1020533..1022356 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  DV119_RS05640 - 1022358..1022714 (+) 357 WP_000114433.1 hypothetical protein -
  DV119_RS05645 dnaJ 1023116..1024252 (+) 1137 WP_050073039.1 molecular chaperone DnaJ -
  DV119_RS05650 - 1024632..1024919 (-) 288 WP_000777760.1 hypothetical protein -
  DV119_RS05655 - 1024929..1025339 (-) 411 WP_001278301.1 HIT family protein -
  DV119_RS05660 pptA 1025407..1026138 (+) 732 WP_050221198.1 ABC transporter ATP-binding protein Regulator
  DV119_RS05665 pptB 1026135..1027184 (+) 1050 WP_050221199.1 ABC transporter permease Regulator
  DV119_RS05670 - 1027246..1027575 (-) 330 WP_000132585.1 hypothetical protein -
  DV119_RS05675 comE/blpR 1027871..1028608 (+) 738 WP_050221200.1 response regulator transcription factor Regulator
  DV119_RS05680 - 1028622..1029971 (+) 1350 WP_050221201.1 sensor histidine kinase -
  DV119_RS12160 - 1030205..1030396 (+) 192 WP_376738204.1 hypothetical protein -
  DV119_RS11510 - 1030597..1030761 (+) 165 WP_049511538.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27125.65 Da        Isoelectric Point: 4.8865

>NTDB_id=263040 DV119_RS05660 WP_050221198.1 1025407..1026138(+) (pptA) [Streptococcus pneumoniae strain M16808]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININRLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=263040 DV119_RS05660 WP_050221198.1 1025407..1026138(+) (pptA) [Streptococcus pneumoniae strain M16808]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATCGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment