Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   C0119_RS01510 Genome accession   NZ_CP025618
Coordinates   319948..321657 (-) Length   569 a.a.
NCBI ID   WP_108675603.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain SGAir0122     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314948..326657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS01480 (C0119_05935) - 315053..315376 (+) 324 WP_004810087.1 pyrimidine/purine nucleoside phosphorylase -
  C0119_RS01485 (C0119_05930) rlmB 315529..316278 (+) 750 WP_004810085.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C0119_RS01490 (C0119_05925) - 316285..317208 (+) 924 WP_034424053.1 DMT family transporter -
  C0119_RS01495 (C0119_05920) coaE 317229..317825 (-) 597 WP_004810082.1 dephospho-CoA kinase -
  C0119_RS16130 (C0119_05915) pilD 317827..318687 (-) 861 WP_004810080.1 prepilin peptidase Machinery gene
  C0119_RS01505 (C0119_05910) pilC 318687..319916 (-) 1230 WP_004810078.1 type II secretion system F family protein Machinery gene
  C0119_RS01510 (C0119_05905) pilB 319948..321657 (-) 1710 WP_108675603.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C0119_RS01515 (C0119_05900) tpiA 321940..322731 (+) 792 WP_004810075.1 triose-phosphate isomerase -
  C0119_RS01520 (C0119_05895) secG 322745..323074 (+) 330 WP_004810073.1 preprotein translocase subunit SecG -
  C0119_RS01550 (C0119_05865) rimP 324135..324659 (+) 525 WP_004810072.1 ribosome maturation factor RimP -
  C0119_RS01555 (C0119_05860) nusA 324695..326179 (+) 1485 WP_004810069.1 transcription termination factor NusA -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63487.68 Da        Isoelectric Point: 4.9232

>NTDB_id=263040 C0119_RS01510 WP_108675603.1 319948..321657(-) (pilB) [Acinetobacter schindleri strain SGAir0122]
MTAIQGSPRFTGFIRRLVDEGVISAEDMQGALSSAKKDKIDIVPYLIEHHRLSPTKIAETISLEFGEPLFDISAYDPALI
VREDFDEKIITKHRVLPIFKNSNILFIATSNPTNIEAIDAVRFATKLNIETIIVEHNKLEKLIEQNFTEESTFEFDDDFD
LDVDIDSSDPNKDDENDNKGDEAPIVKNINKLLIDAIRMGASDLHFEPYEKMYRVRYRVDGVLRQIATPPLQLATRLASR
LKVMSQMDISEKRVPQDGRIKLKLSKNKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEPDQKALFMEALDKPQ
GMLLITGPTGSGKTVSLYTGLNILNREDTNISTAEDPVEINLQGINQVNVNNKVGLTFSAALKSFLRQDPDIVMVGEIRD
LETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCPHCKKPADIPRQSLLEMGFS
DDDLQNPEFNIFEPVGCNECREGYKGRVGIYEVMKVTPEISRIIMEDGNAIEIAEASARAGFNNLRRSGLLKVMQGVTSL
QEVNRVTSE

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=263040 C0119_RS01510 WP_108675603.1 319948..321657(-) (pilB) [Acinetobacter schindleri strain SGAir0122]
ATGACAGCAATTCAGGGATCTCCAAGATTTACGGGGTTTATTCGTCGACTTGTCGATGAAGGGGTTATATCTGCAGAAGA
TATGCAGGGTGCTTTGAGTAGTGCCAAAAAAGATAAAATTGATATTGTTCCCTATCTGATTGAACATCACCGCCTCTCGC
CAACCAAAATCGCAGAAACGATTTCTCTTGAATTCGGTGAACCGCTATTTGACATCAGTGCTTATGATCCTGCCCTGATC
GTACGCGAAGATTTTGATGAAAAGATTATTACCAAACACCGCGTGCTGCCGATCTTTAAAAATAGCAATATTCTGTTTAT
CGCGACCAGTAACCCGACCAATATCGAAGCAATTGATGCTGTCCGTTTCGCGACCAAGCTGAATATTGAAACCATTATTG
TTGAACATAATAAACTCGAAAAACTGATCGAGCAGAATTTTACTGAAGAAAGCACTTTTGAATTTGATGATGATTTTGAT
CTAGATGTTGATATCGATAGCTCTGACCCGAATAAAGATGATGAGAATGACAATAAAGGTGATGAAGCACCCATTGTTAA
AAATATTAATAAGTTACTGATTGATGCAATCCGTATGGGTGCATCTGATTTACACTTTGAACCGTATGAAAAAATGTACC
GTGTGCGTTACCGAGTCGACGGGGTCTTGCGTCAAATCGCCACGCCACCTTTACAGCTTGCAACACGTCTGGCTTCACGT
CTTAAAGTTATGTCACAAATGGATATTTCCGAGAAGCGTGTGCCTCAAGATGGCCGGATCAAGTTAAAACTTTCTAAAAA
TAAGGCCATTGACTTCCGTGTCAACTCACTCCCAACCCTGTTTGGGGAAAAACTGGTACTGCGTATTCTGGATCCATCGA
GTGCCATGCTAGGTATTGATGCTTTGGGGTATGAGCCTGATCAAAAAGCCTTATTTATGGAGGCACTAGATAAGCCTCAA
GGTATGCTGTTAATTACCGGTCCGACAGGCTCTGGTAAAACTGTATCTCTTTATACCGGTTTAAATATCCTGAATCGTGA
AGACACCAATATTTCAACTGCTGAAGATCCAGTTGAAATTAACTTGCAAGGGATCAACCAGGTTAACGTCAATAATAAAG
TCGGCCTAACCTTCTCTGCTGCCTTGAAATCATTCCTGCGCCAGGATCCTGATATTGTCATGGTCGGTGAGATCCGTGAC
CTGGAAACTGCAGAGATTGCAATCAAGGCAGCACAAACAGGTCATATGGTGATGTCAACACTACATACCAACAGCGCACC
AGAAACCCTGACCCGTTTACGTAATATGGGTGTGCCATCATTTAACATTGCCACCTCGGTGAATTTGGTGATTGCTCAGC
GTTTGGCGCGTCGCCTTTGTCCACATTGCAAAAAACCGGCAGATATTCCACGTCAGAGCCTGCTTGAAATGGGCTTTAGC
GATGATGATTTACAGAATCCGGAATTTAATATTTTTGAACCTGTCGGATGTAACGAATGTCGTGAAGGGTATAAAGGTCG
AGTCGGTATTTATGAAGTCATGAAAGTGACACCAGAGATTTCACGTATTATTATGGAAGATGGCAATGCAATTGAGATTG
CCGAAGCTTCCGCACGCGCAGGTTTTAACAATTTACGCCGATCAGGGTTATTAAAGGTAATGCAGGGGGTGACTTCTCTT
CAGGAAGTCAATCGTGTTACCAGCGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(191-458)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

79.298

100

0.794
  pilB Acinetobacter baylyi ADP1

76.316

100

0.765
  pilB Legionella pneumophila strain ERS1305867

52.593

94.903

0.499
  pilF Neisseria gonorrhoeae MS11

49.198

98.594

0.485
  pilB Vibrio parahaemolyticus RIMD 2210633

49.192

97.891

0.482
  pilB Vibrio cholerae strain A1552

48.148

99.649

0.48
  pilB Vibrio campbellii strain DS40M4

48.101

97.188

0.467
  pilF Thermus thermophilus HB27

37.258

100

0.373
  pilB/pilB1 Synechocystis sp. PCC 6803

34.314

100

0.369

Multiple sequence alignment