Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PATL_RS17135 Genome accession   NC_008228
Coordinates   4008290..4009495 (-) Length   401 a.a.
NCBI ID   WP_011576079.1    Uniprot ID   A0A9J9ESR9
Organism   Paraglaciecola sp. T6c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4003290..4014495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PATL_RS17105 (Patl_3337) - 4003416..4004453 (-) 1038 WP_011576073.1 alpha/beta hydrolase -
  PATL_RS17110 (Patl_3338) - 4004589..4005332 (-) 744 WP_011576074.1 glutathione peroxidase -
  PATL_RS17115 (Patl_3339) yacG 4005482..4005712 (-) 231 WP_011576075.1 DNA gyrase inhibitor YacG -
  PATL_RS17120 (Patl_3340) zapD 4005749..4006501 (-) 753 WP_041714012.1 cell division protein ZapD -
  PATL_RS17125 (Patl_3341) coaE 4006632..4007246 (-) 615 WP_011576077.1 dephospho-CoA kinase -
  PATL_RS17130 (Patl_3342) pilD 4007281..4008183 (-) 903 WP_011576078.1 prepilin peptidase Machinery gene
  PATL_RS17135 (Patl_3343) pilC 4008290..4009495 (-) 1206 WP_011576079.1 type II secretion system F family protein Machinery gene
  PATL_RS17140 (Patl_3344) - 4009560..4010006 (-) 447 WP_011576080.1 pilin -
  PATL_RS17145 (Patl_3345) nadC 4010211..4011053 (-) 843 WP_011576081.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PATL_RS17150 (Patl_3346) - 4011101..4011637 (-) 537 WP_232283244.1 retropepsin-like aspartic protease family protein -
  PATL_RS17155 (Patl_3347) ampD 4011705..4012289 (+) 585 WP_011576083.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PATL_RS17160 (Patl_3348) ampE 4012349..4013161 (+) 813 WP_011576084.1 beta-lactamase regulator AmpE -
  PATL_RS17165 (Patl_3349) - 4013379..4014134 (+) 756 WP_011576085.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 43080.75 Da        Isoelectric Point: 9.8509

>NTDB_id=26052 PATL_RS17135 WP_011576079.1 4008290..4009495(-) (pilC) [Paraglaciecola sp. T6c]
MPKATTTFVWSGANRKGQTVKGEISALSVLEAKNLLRRQGVSAKKVKKLSKPFFGAQKIKPVDISIISRQIATMLSAGVT
LIQTIDMIAGGHNNPNMRKMLGEIGGEVKAGNPFSSALRKHPEQFDDLYCDLVSTGEQSGALETIYDRIATYKEKAEALK
SKIKKAMFYPVAVIVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFLQDYGLFVGAGLVVASIVFSKTYK
KSKRLRDSLDGKMLKIPVIGEILKKAAVARFSRTLATTFAAGVPLIGALDSAAGASGNAVFRDAILFVKKEVAGGTQMNT
AMRATAVFPDMVTQMVAIGEEAGAVDDMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEMGNV
V

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=26052 PATL_RS17135 WP_011576079.1 4008290..4009495(-) (pilC) [Paraglaciecola sp. T6c]
ATGCCAAAAGCCACCACTACCTTTGTATGGAGCGGAGCCAACCGTAAAGGTCAAACTGTGAAAGGGGAGATCAGTGCGTT
ATCGGTATTAGAAGCAAAAAACCTGTTACGTCGCCAAGGCGTATCGGCTAAGAAAGTCAAAAAGCTCTCAAAGCCTTTCT
TCGGTGCTCAGAAAATCAAACCCGTGGACATCAGTATTATCTCTCGGCAAATCGCGACGATGTTAAGCGCTGGGGTCACC
TTAATTCAAACCATAGATATGATAGCGGGTGGGCATAACAACCCGAATATGCGCAAAATGCTGGGGGAAATAGGCGGCGA
AGTAAAAGCGGGTAATCCTTTTTCAAGTGCGCTGCGCAAACATCCAGAGCAATTTGATGATTTGTATTGCGATTTAGTGT
CGACCGGAGAGCAATCGGGTGCCCTTGAAACCATTTACGACAGGATCGCCACGTACAAAGAAAAGGCTGAAGCGTTAAAA
TCAAAAATTAAAAAAGCCATGTTTTATCCGGTGGCCGTTATTGTAGTGGCCTTTATTGTCACCACCATATTGCTCATATT
CGTGGTACCGCAATTTGAAGAAATTTTCAGTAGCTTTGGTGCTGAGTTGCCGGCATTTACTCAGTTTGTGTTGGCTATTT
CCCGCTTTTTGCAAGACTACGGTCTGTTCGTGGGGGCGGGCTTAGTGGTAGCGAGTATTGTATTCAGTAAGACTTATAAA
AAATCAAAACGATTACGAGACAGTCTAGATGGCAAAATGCTTAAAATCCCTGTGATTGGAGAAATATTAAAAAAAGCCGC
GGTGGCGCGCTTTAGTCGCACCTTAGCCACGACTTTTGCTGCGGGCGTTCCGTTAATCGGTGCCCTTGATTCTGCCGCAG
GAGCGTCGGGTAATGCGGTGTTTCGGGATGCTATTTTATTCGTTAAAAAAGAAGTCGCTGGCGGTACGCAAATGAACACG
GCCATGCGCGCCACGGCTGTATTTCCTGATATGGTGACACAAATGGTTGCTATTGGTGAAGAGGCCGGCGCAGTAGATGA
TATGCTGAGTAAAATCGCGACGATATACGAAGCAGAAGTCGACGATATGGTGGATGGTCTAACCAGCTTACTAGAGCCTA
TGATAATGGCCGTGCTTGGGGTGGTGATTGGTGGTTTGATTGTTGCCATGTATTTACCGATATTCGAAATGGGTAATGTT
GTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-190)

Type II secretion system (T2SS), protein F (T2SSF)

(271-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.794

99.252

0.584
  pilC Acinetobacter baumannii D1279779

52.513

99.252

0.521
  pilC Acinetobacter baylyi ADP1

52.513

99.252

0.521
  pilC Legionella pneumophila strain ERS1305867

49.624

99.501

0.494
  pilC Vibrio cholerae strain A1552

45.074

100

0.456
  pilC Vibrio campbellii strain DS40M4

44.081

99.002

0.436
  pilG Neisseria meningitidis 44/76-A

43

99.751

0.429
  pilG Neisseria gonorrhoeae MS11

42.75

99.751

0.426
  pilC Thermus thermophilus HB27

38.442

99.252

0.382

Multiple sequence alignment