Detailed information NTG0026051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PATL_RS17130
• Genome accession: NC_008228
• Coordinates: 4007281..4008183 (-)
• Length: 300 a.a.
• NCBI ID: WP_011576078.1
• Uniprot ID: -
• Organism: Paraglaciecola sp. T6c
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4002281..4013183

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PATL_RS17105 (Patl_3337)	-	4003416..4004453 (-)	1038	WP_011576073.1	alpha/beta hydrolase	-
PATL_RS17110 (Patl_3338)	-	4004589..4005332 (-)	744	WP_011576074.1	glutathione peroxidase	-
PATL_RS17115 (Patl_3339)	yacG	4005482..4005712 (-)	231	WP_011576075.1	DNA gyrase inhibitor YacG	-
PATL_RS17120 (Patl_3340)	zapD	4005749..4006501 (-)	753	WP_041714012.1	cell division protein ZapD	-
PATL_RS17125 (Patl_3341)	coaE	4006632..4007246 (-)	615	WP_011576077.1	dephospho-CoA kinase	-
PATL_RS17130 (Patl_3342)	pilD	4007281..4008183 (-)	903	WP_011576078.1	prepilin peptidase	Machinery gene
PATL_RS17135 (Patl_3343)	pilC	4008290..4009495 (-)	1206	WP_011576079.1	type II secretion system F family protein	Machinery gene
PATL_RS17140 (Patl_3344)	-	4009560..4010006 (-)	447	WP_011576080.1	pilin	-
PATL_RS17145 (Patl_3345)	nadC	4010211..4011053 (-)	843	WP_011576081.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PATL_RS17150 (Patl_3346)	-	4011101..4011637 (-)	537	WP_232283244.1	retropepsin-like aspartic protease family protein	-
PATL_RS17155 (Patl_3347)	ampD	4011705..4012289 (+)	585	WP_011576083.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
PATL_RS17160 (Patl_3348)	ampE	4012349..4013161 (+)	813	WP_011576084.1	beta-lactamase regulator AmpE	-

Sequence

Protein

• Length: 300 a.a.
• Molecular weight: 33660.65 Da
• Isoelectric Point: 5.1944

>NTDB_id=26051 PATL_RS17130 WP_011576078.1 4007281..4008183(-) (pilD) [Paraglaciecola sp. T6c]
MDAIFQLMADSLIFFLGFVFIISLMIGSFLNVVIYRLPIMMERSWKADFHAHFDTDTALENTPSKAPTEPANFNLVKPDS
TCPNCQHKIRAWENIPVLSWLLLRGKCSQCQNAISVRYPLVELGTAFCSVWIAWHFGYSWSALAAVVLTWVLVALIFIDI
DTMLLPDQLTLPLLWMGLLFSIINPDVTPTDSIIGATTGYLSLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQYLP
IVILMSSLVGAVIGISILTIQGKDKGQAIPFGPYLAIAGWLTLLYGDWISDYYWQWVGIR

Nucleotide

• Length: 903 bp

>NTDB_id=26051 PATL_RS17130 WP_011576078.1 4007281..4008183(-) (pilD) [Paraglaciecola sp. T6c]
ATGGATGCAATTTTTCAGCTGATGGCTGACTCTCTCATTTTTTTCCTCGGTTTCGTTTTTATCATTAGCTTGATGATAGG
TAGCTTCTTGAATGTGGTTATTTATCGCTTACCCATTATGATGGAGCGCAGCTGGAAAGCGGATTTTCACGCGCACTTTG
ATACTGACACAGCGCTCGAAAATACGCCTAGCAAGGCACCTACTGAGCCTGCAAATTTTAACCTTGTGAAACCTGATTCG
ACCTGTCCAAACTGCCAGCATAAAATTCGGGCGTGGGAAAATATCCCGGTGCTAAGCTGGTTGTTGCTTAGAGGGAAATG
CAGCCAATGTCAAAACGCTATTTCAGTTCGTTACCCTCTTGTTGAGCTAGGCACTGCATTTTGCTCCGTGTGGATAGCCT
GGCATTTTGGTTATTCTTGGTCAGCGCTTGCAGCCGTGGTGCTGACTTGGGTTTTGGTTGCGCTGATTTTTATCGATATT
GATACCATGTTGTTGCCTGACCAGCTCACGCTACCGTTACTGTGGATGGGATTACTGTTCAGTATTATTAACCCTGACGT
AACACCCACAGATTCGATCATAGGGGCGACCACAGGCTATTTAAGTCTTTGGTCTGTGTATTGGGCATTCAAGTTACTCA
CAGGTAAGGAAGGCATGGGGTATGGAGACTTCAAACTACTGGCTGCGCTTGGTGCTTGGTTGGGATGGCAGTATTTGCCT
ATCGTTATCCTCATGTCTTCATTGGTTGGCGCTGTTATTGGAATTAGCATATTGACAATTCAGGGCAAGGACAAAGGTCA
AGCGATTCCCTTTGGACCGTATTTGGCCATTGCTGGTTGGCTAACCTTGTTATACGGAGATTGGATTTCTGACTATTACT
GGCAGTGGGTTGGCATACGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-136)

• Type IV leader peptidase family (Peptidase_A24) (147-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	56.383	94	0.53
pilD	Vibrio cholerae strain A1552	56.228	93.667	0.527
pilD	Acinetobacter baumannii D1279779	50.909	91.667	0.467
pilD	Acinetobacter nosocomialis M2	50.182	91.667	0.46
pilD	Neisseria gonorrhoeae MS11	48.315	89	0.43