Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CU648_RS05210 Genome accession   NZ_CP025122
Coordinates   969307..970545 (-) Length   412 a.a.
NCBI ID   WP_101194816.1    Uniprot ID   -
Organism   Bacillus sp. HBCD-sjtu     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 964307..975545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU648_RS05185 (CU648_05185) spoVS 964390..964650 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  CU648_RS05190 (CU648_05190) - 964799..965593 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  CU648_RS05195 (CU648_05195) rny 965759..967321 (-) 1563 WP_000099773.1 ribonuclease Y -
  CU648_RS05200 (CU648_05200) - 967804..968226 (-) 423 Protein_1001 DNA recombination/repair protein RecA -
  CU648_RS05205 (CU648_05205) recA 968554..969162 (-) 609 Protein_1002 recombinase RecA -
  CU648_RS05210 (CU648_05210) cinA 969307..970545 (-) 1239 WP_101194816.1 competence/damage-inducible protein CinA Machinery gene
  CU648_RS05215 (CU648_05215) pgsA 970566..971144 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CU648_RS05220 (CU648_05220) - 971208..972119 (-) 912 WP_000137488.1 helix-turn-helix domain-containing protein -
  CU648_RS05225 (CU648_05225) - 972141..972926 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  CU648_RS05230 (CU648_05230) - 973066..973314 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  CU648_RS05235 (CU648_05235) ymfI 973390..974103 (-) 714 WP_000759617.1 elongation factor P 5-aminopentanone reductase -
  CU648_RS05240 (CU648_05240) yfmH 974207..975493 (-) 1287 WP_101194817.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45377.58 Da        Isoelectric Point: 4.8340

>NTDB_id=258477 CU648_RS05210 WP_101194816.1 969307..970545(-) (cinA) [Bacillus sp. HBCD-sjtu]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVLPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=258477 CU648_RS05210 WP_101194816.1 969307..970545(-) (cinA) [Bacillus sp. HBCD-sjtu]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTGCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment