Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PCRYO_RS00345 Genome accession   NC_007969
Coordinates   76476..77699 (-) Length   407 a.a.
NCBI ID   WP_011512443.1    Uniprot ID   Q1QEQ1
Organism   Psychrobacter cryohalolentis K5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 71476..82699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCRYO_RS00325 (Pcryo_0064) - 73502..73837 (+) 336 WP_011512439.1 pyrimidine/purine nucleoside phosphorylase -
  PCRYO_RS00330 (Pcryo_0065) rlmB 74042..74812 (+) 771 WP_011512440.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PCRYO_RS00335 (Pcryo_0066) coaE 74775..75467 (-) 693 WP_011512441.1 dephospho-CoA kinase -
  PCRYO_RS00340 (Pcryo_0067) pilD 75551..76450 (-) 900 WP_011512442.1 prepilin peptidase Machinery gene
  PCRYO_RS00345 (Pcryo_0068) pilC 76476..77699 (-) 1224 WP_011512443.1 type II secretion system F family protein Machinery gene
  PCRYO_RS00350 (Pcryo_0069) pilB 77937..79649 (-) 1713 WP_011512444.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PCRYO_RS00355 (Pcryo_0070) tpiA 80047..80856 (+) 810 WP_011512445.1 triose-phosphate isomerase -
  PCRYO_RS00360 (Pcryo_0071) secG 81085..81393 (+) 309 WP_011512446.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44489.40 Da        Isoelectric Point: 9.7800

>NTDB_id=25759 PCRYO_RS00345 WP_011512443.1 76476..77699(-) (pilC) [Psychrobacter cryohalolentis K5]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKSIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHPRYFDDLFCSLVDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVVVVAIIVTIILLVKVVPVFADLFSSFGAELPAFTQMVVGMSEWMQAWWFILIVFIGGAIIGF
SEAKKRSKKFRDVLDRAVLKAPIFGNIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSIRSTNLFPSLAIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=25759 PCRYO_RS00345 WP_011512443.1 76476..77699(-) (pilC) [Psychrobacter cryohalolentis K5]
ATGGCAAAAGCTAAGACCGACATGCTGTTAGACTTTGTCTATGATGGGGTAAATCGGCGCGGGCAAAAGGTAAAAGGTGA
GACGACCAGTCGTAGCTTAGAGCTTGCCAAAGCCACGTTGCGCAAACAAGGTATTACGGTTAAAGGTATCAAGAAAAAGC
CAAAACCCTTATACACCTTTAAGAAGTCCATCAAGCCTATCGATATTGCTATTTTTGCACGTCAATTGGCAACTATGATG
AAAGCTGGGGTGCCATTGACTCAATCCTTTGAGATTGTCGCGGACTCTCTAGATAATCCGAGTATGAAAGACTTGGTATT
ACAAATTAAAGCCGATATTGAAGCTGGTGGTACTTTTGCATCGGCATTACGTCGCCATCCCCGCTATTTTGACGATCTTT
TTTGCTCGCTTGTTGATTCTGGCGAGCAGTCAGGTGCGTTAGAAACCATGCTAGAGCGAGTTGCGACTTATAAAGAGAAA
AGCGAGCTGTTAAAAGCTAAAATTAAAAAAGCTATGAAATATCCTATCGCGGTCGTTGTAGTTGCTATTATTGTCACCAT
TATTCTGCTTGTTAAAGTCGTTCCAGTGTTTGCTGATTTATTTAGCTCTTTTGGTGCAGAATTACCTGCTTTTACCCAAA
TGGTCGTAGGTATGTCTGAGTGGATGCAAGCATGGTGGTTCATCTTAATTGTATTTATTGGTGGCGCAATTATCGGCTTT
TCAGAAGCTAAGAAGCGTTCAAAGAAATTTCGTGATGTCTTAGACCGTGCGGTATTAAAAGCCCCAATATTTGGCAATAT
CGCTTACCAAGCGGTGATTGCGCGTTTTGCTCGTACGCTGTCTACAACTTTTGCTGCCGGCGTACCGCTTATTGATGCGC
TCGATTCAACTGCTGGCGCGGCCAATAATGTAGTATTTTATAACGCTATTCAGCAAATCAAAAATGACGTCTCTACGGGA
CAACAATTACAGTTTTCCATACGTTCAACCAATTTATTTCCAAGCCTTGCTATTCAAATGGTAGGTATCGGTGAAGAGTC
TGGTAGCTTAGAAGAGATGCTCGATAAAGTAGCAGTTTATTATGAAAACGAAGTTGATAACGCTGTTGATGGTTTGACCA
GCTTGATGGAGCCGCTTATTATGGCGGTACTTGGCGTATTAGTTGGTGGTTTGGTCATTGCCATGTACTTACCAATCTTC
CAGATGGGCTCAGTAGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1QEQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.098

100

0.703
  pilC Acinetobacter baylyi ADP1

69.118

100

0.693
  pilC Pseudomonas stutzeri DSM 10701

64.557

97.052

0.627
  pilC Legionella pneumophila strain ERS1305867

56.14

98.034

0.55
  pilC Vibrio cholerae strain A1552

43.627

100

0.437
  pilG Neisseria gonorrhoeae MS11

43.182

97.297

0.42
  pilG Neisseria meningitidis 44/76-A

42.929

97.297

0.418
  pilC Vibrio campbellii strain DS40M4

42.145

98.526

0.415

Multiple sequence alignment